Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq104 145 9e-30 seq10 102 1e-16 seq7 98.7 1e-15 seq4 98.7 1e-15 seq242 93.3 5e-14 >seq104 Length=774161 Score = 145 bits (160), Expect = 9e-30 Identities = 252/364 (69%), Gaps = 2/364 (1%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | | | ||| |||||| || ||| | | || || || || Sbjct 269183 ATCAAACCGTCCTGGCCTCAACAAAGCGGAATCAAGAATGTCAGCTCTGTTAGTTGCTGC 269124 Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 || || | ||||| || | | || ||||||||||| || |||||||| ||||||| Sbjct 269123 AATTACGATGATACCGGTGTTACCCTCGAAACCATCCATTTCGGTCAAAAGCTGGTTAAG 269064 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9373 |||||| || | ||||||||| || | ||||| | | ||| ||| ||||| Sbjct 269063 AGTTTGCTCTCTCTCATCATTCCCTCCACCAATACCAGTTCCTCTTTGTCGTCCAACGGC 269004 Query 9374 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATC 9433 |||||| ||||| | ||||||||||| || ||| || ||| | | || ||||| Sbjct 269003 ATCAATTTCATCCACAAAGACAATACAGGGGGCATTCTCCTTGGCCTTCTTGAAAAGATC 268944 Query 9434 GCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG 9493 ||||| | || || |||||||||||||| || ||||| | | ||||| || | Sbjct 268943 ACGAACTCGAGAAGCACCAACACCAACAAACATTTCAACAAACTCAGAACCGGAA-ATGG 268885 Query 9494 -GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 9552 || ||| || ||| || |||||| ||||| || || ||||||||||| || || | Sbjct 268884 AGAAGAATGGCACACCAGCTTCACCGGCAATTGCCTTAGCAAGAAGAGTCTTTCCGGTTC 268825 Query 9553 CTGG 9556 | || Sbjct 268824 CAGG 268821 >seq10 Length=91128445 Score = 102 bits (112), Expect = 1e-16 Identities = 307/469 (65%), Gaps = 14/469 (3%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 ||| || || ||| | ||| || || || ||||||| || || || | | | ||| Sbjct 89879471 ATCCAGAATTTCAGGCCTATTAGTGGCAGCAATGACAATAACTCCAGTATTACCAGTAAA 89879530 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| || ||||| || || || | |||||| |||| |||||||||| || Sbjct 89879531 ACCATCCATTTCAGTCAACAGCTGATTCAAAGTTTGCTCCCTTTCATCATTCCCT---CC 89879587 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| |||| | | || |||| || |||||||||||||| ||||| || | ||| Sbjct 89879588 ACCAATCCCAGTTCCTCTCTGTCTTCCAACAGCATCAATCTCATCGATGAACACCAAACA 89879647 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 ||| ||| | || | | ||| || || | ||| || || || || ||||| Sbjct 89879648 TGGGGAATTAGCCTTTGCCTTGTTAAACAGGTCCCTAACTCTGGAAGCTCCAACGCCAAC 89879707 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGC 9520 ||||||||| | || | || | ||| | ||| || || | ||| || || Sbjct 89879708 AAACATCTCGATGAACTCTGAACCAGAAAGGGAAAAGAAAGGAACCCCTGCTTCCCCTGC 89879767 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 |||||| ||| || | |||||||| || ||||| || || | |||| || Sbjct 89879768 AATGGCCTTGGCCAGCAATGTCTTACCAGTCCCTGGAGGTCCAATTAGAA--GCACTCCT 89879825 Query 9581 T--GGAATCTTGGCGCCACTTCC--AAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636 | ||||| |||| ||| || | || | | ||| |||| || | || ||||| | Sbjct 89879826 TTGGGAATTGTGGCACCAATTGCTGCAAATTTTTCTGGGGTT--TTTAAGAACTCCACTA 89879883 Query 9637 TCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 9685 ||||| || || | ||||| | ||||| || | |||||| |||| Sbjct 89879884 CCTCTTGAAAATCTTGCTTGGCTTCATCAATACCAGCTACATCGTTAAA 89879932 >seq7 Length=42802127 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || ||||||||||| || || || | || ||| | ||| | ||| Sbjct 28741203 TGAGGCCTTGGAGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGA 28741144 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| ||| || || | | ||||||||||||| | | || || || | || Sbjct 28741143 GACATCATGTGATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCA 28741084 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| ||||||| |||||| |||| || | | || | || | || | || || Sbjct 28741083 ACCCTCATCAACATGTGTTGGGGCCTTTCTAT-AACCTTCCCTTGAACTTTTAAGAGGTA 28741025 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | | ||||||||||||||| |||||| ||| || | ||| ||||||| Sbjct 28741024 GGACCTCTCAAGGGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCG 28740977 >seq4 Length=78750349 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || ||||||||||| || || || | || ||| | ||| | ||| Sbjct 13233482 TGAGGCCTTGGAGTTCCAGCATTGAAAAGTGTGGGAGAAGCATGAGTAAACCATCTTTGA 13233423 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| ||| || || | | ||||||||||||| | | || || || | || Sbjct 13233422 GACATCATGTGATAAGTTTTTATAGCAGAATCAATGTCATTCTTATGAATTCCAACTGCA 13233363 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| ||||||| |||||| |||| || | | || | || | || | || || Sbjct 13233362 ACCCTCATCAACATGTGTTGGGGCCTTTCTAT-AACCTTCCCTTGAACTTTTAAGAGGTA 13233304 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | | ||||||||||||||| |||||| ||| || | ||| ||||||| Sbjct 13233303 GGACCTCTCAAGGGTTTTGAAACCAAAATAATCATAGTCAAAGTCCCG 13233256 >seq242 Length=346230 Score = 93.3 bits (102), Expect = 5e-14 Identities = 305/469 (65%), Gaps = 14/469 (3%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 ||| || || ||| | ||| || || || ||||||| || || || | | | ||| Sbjct 215903 ATCCAGAATTTCAGGCCTATTAGTAGCAGCAATGACAATAACTCCAGTATTACCAGTAAA 215962 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| || ||||| || || || | |||||| |||| |||||||||| || Sbjct 215963 ACCATCCATTTCAGTCAACAGCTGATTCAAAGTTTGCTCCCTTTCATCATTCCCT---CC 216019 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| |||| | | || |||| || |||||||||||||| ||||| || | ||| Sbjct 216020 ACCAATCCCAGTTCCTCTCTGTCTTCCAACAGCATCAATCTCATCGATGAACACCAAACA 216079 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 ||| || | || | | ||| || || | ||| || || || || || || Sbjct 216080 TGGGGAGTTAGCCTTTGCCTTGTTAAACAGGTCCCTAACTCTGGAAGCTCCAACGCCTAC 216139 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGC 9520 ||||||||| | || | || | ||| | ||| || || | ||| || || Sbjct 216140 AAACATCTCGATGAACTCTGAACCAGAAAGGGAAAAGAAAGGAACCCCTGCTTCCCCTGC 216199 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 |||||| ||| || | |||||||| || ||||| || || | |||| || Sbjct 216200 AATGGCCTTGGCCAGCAATGTCTTACCAGTCCCTGGAGGTCCAATTAGAA--GCACTCCT 216257 Query 9581 T--GGAATCTTGGCGCCACTTCC--AAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636 | ||||| |||| ||| || | || | | ||| |||| || | || ||||| | Sbjct 216258 TTGGGAATTGTGGCACCAATTGCTGCAAATTTTTCTGGGGTT--TTTAAGAACTCCACTA 216315 Query 9637 TCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 9685 ||||| || || | ||||| | ||||| || | |||||| |||| Sbjct 216316 CCTCTTGAAAATCTTGCTTGGCTTCATCAATACCAGCTACATCGTTAAA 216364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589913335695520