Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_015252.1 Length=36953 Score E Sequences producing significant alignments: (Bits) Value seq1219 138 3e-28 >seq1219 Length=45996 Score = 138 bits (152), Expect = 3e-28 Identities = 182/250 (73%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 32105 GGAGCAGCAGTTGCCACATTTACACTAGCTGTAAATCGTACGTTTACGAATCAGC-AAGG 32163 ||| | || || || | |||||||| || || ||| | | || | || ||| |||| Sbjct 33693 GGAACGGCGGTAGCGAACTTTACACTTGCGGTGAATAGACCATTCAAAAA-CAGTGAAGG 33635 Query 32164 TGAGCGTGAAGCTGATTACATTAACTGTGTCGTTTGGCGTAAGGCTGCCGAAAGCGTAGC 32223 || ||||| |||| ||| ||||| || || ||||| || | || || | |||||| Sbjct 33634 GGAAAACGAAGCGGATTTCATCAACTGCGTAGTGTGGCGCAAACCAGCAGAGAACGTAGC 33575 Query 32224 TAACTACTTGAAAAAAGGAAGTTTAGCAGGTGTTGATGGTCGATTACAAACACGTAACTA 32283 ||||| |||||| ||||||||| | |||||| | ||||| || |||| ||||| ||||| Sbjct 33574 TAACTTCTTGAAGAAAGGAAGTCTGGCAGGTATAGATGGCAGAGTACAGACACGCAACTA 33515 Query 32284 TGAAGGCAATGACGGTAAGCGTGTATATGTGACAGAGGTCATTGCGGAAAGTGTACAGTT 32343 || || || || ||||| |||| |||||| |||||| | || || || ||||| Sbjct 33514 CGACAATAACGAAGGCAAGCGGGTATTTGTGACTGAGGTCGTGGCAGAGTCGGTGCAGTT 33455 Query 32344 CCTAGAGCCT 32353 |||||||||| Sbjct 33454 CCTAGAGCCT 33445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118115167460040