Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_015254.1 Length=41518 Score E Sequences producing significant alignments: (Bits) Value seq1219 100 8e-17 >seq1219 Length=45996 Score = 100 bits (110), Expect = 8e-17 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 28922 CTCTACCTCTGGACAGAAAAAGGGGCATGGTTACACGCTAAATCATTGAACACAGACGCA 28981 || || || |||||||| ||||| |||||| |||| |||||||| || ||||| |||| | Sbjct 38956 CTTTATCTTTGGACAGAGAAAGGCGCATGGCTACATGCTAAATCGTTAAACACTGACGAA 38897 Query 28982 GCATGGGACGCATACGAGTTACTTGTAGACGAATATTA 29019 ||||||||||| |||||| ||||||||||| || || Sbjct 38896 GCATGGGACGCTTACGAGGCTCTTGTAGACGACTACTA 38859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132721580556480