Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_015456.1 Length=50661 Score E Sequences producing significant alignments: (Bits) Value seq5259 104 8e-18 seq9 96.9 1e-15 >seq5259 Length=4105 Score = 104 bits (114), Expect = 8e-18 Identities = 183/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 35328 TCTATAGCTGCCGCGATCTCAGTCTCTTTGCTTTGATAGTATCGAAGCGTCTCGGCAACG 35387 || || ||| || | || ||| ||||||||||| ||||| || || || || || || Sbjct 1672 TCAATTGCTTCCTCAATTCCAGGTTCTTTGCTTTGGTAGTAACGCAGAGTTTCCGCTACA 1613 Query 35388 TTTTGAGCTAAGCCGTTAACAGTTAACGAATCGTTAAGCAAGATCACATACTTTCCGTCA 35447 | ||| || | || | ||||||| ||| || || | || ||||||||| ||| ||| Sbjct 1612 TCTTGCGCCATTCCATCGACAGTTAGCGAGTCATTCAACAGGATCACATAATTTACGTTT 1553 Query 35448 GATGCGGTCTGACCATCCGTAGAGATAGCCTTTAGCTCTGTGTCGCTCACAATATCGCTA 35507 | | | || || || || ||| || || | ||||| ||||| ||||||||||| Sbjct 1552 TCTACTGGCTCGCCGTCAGTCTGGATCGCTTTCATTTCTGTATCGCTTACAATATCGCTG 1493 Query 35508 ATTACAGCCAG-CTTAATTGGTTGCTCCAGGAATACGATAGTTGCACCGACTCGAATCAG 35566 || || ||||| |||| | || | | |||||||| ||||| || ||||| || Sbjct 1492 ATAACCGCCAGTTTTAAAGGAGTGGT-TAAAAATACGATTGTTGCGCCAGTGCGAATAAG 1434 Query 35567 AGCAAGCTGATCTTTCCATTTTGT 35590 || |||| | || ||||||||| Sbjct 1433 AGAAAGCGGCTCACGCCATTTTGT 1410 Score = 102 bits (112), Expect = 3e-17 Identities = 229/337 (68%), Gaps = 8/337 (2%) Strand=Plus/Minus Query 35880 GCACGCAACCCTTACTTCTCGATCCCCTTTATATCTGTATGCAACCATTTCCAGATTCTC 35939 |||| |||| | | || ||||| ||||| |||||||||| ||| ||||| ||||| Sbjct 972 GCACACAACGCGCATTTTACGATCTCCTTTGTATCTGTATGAAACAATTTCAAGATTTGA 913 Query 35940 AGGAGTGAAGCAGGCCCATACCTCTTGCTTTGT-GTGAAATGCAATATGCTGAGCATCAA 35998 ||| | ||| || |||||||| ||||| || | | || | |||| || ||||||| Sbjct 912 AGGTGAGAAACACGCCCATACTTCTTGACCCGTCGCCAGGTGTA-TATGTTGCGCATCAA 854 Query 35999 TCCAATTAAGGCATAAGTAGATCGCTTTTTCTGTTTTACCAGTCACGGCAACCGAACAAC 36058 |||||| || ||| | ||| || | ||| || || || ||||| || ||||| | | Sbjct 853 TCCAATCAACGCAAAGGTAAATTGTTTTGTCAGTCTTGCCAGTTACCGCAACGCTTCCGC 794 Query 36059 TCGTATATTTCTTAGCGTAAAACGATTCCCTT--CCTTCTTCATCAATAATCAAAATATT 36116 ||| || | || |||||||| | | | || ||||| |||| | | | |||||| Sbjct 793 GCGTGTAATCTTTCGCGTAAAA--ACTGCTTTTACCTTCCTCATTGACGAAAAGAATATT 736 Query 36117 GCAAAACTCGTCATCAAGACCGTCCTCGTGTACAAGTTGACACGGGATAGTGTGAAATAC 36176 ||| | || ||||| | | || || || | || || | ||||| ||| ||| Sbjct 735 GCACATATCATCATCCAATTCATCACTATGCACCATGTGGCAAGTGATAGCGTG-TATAT 677 Query 36177 GCTCTCCCT-GCCATCATCGCGACGTTTTACGCCAAC 36212 |||| | | |||| || || |||||||||||| Sbjct 676 GCTCGCAATATCCATTGTCATGAGTTTTTACGCCAAC 640 Score = 93.3 bits (102), Expect = 1e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 36447 CATCAACCAACCGATCCCGGAGTCGTTACCGCATGAGTTGCAGATCGCACCGCCGTCTCC 36506 ||| ||| | |||||||| || || || ||||| |||||| || |||||||| || Sbjct 353 CATGAACAATCCGATCCCTGAATCATTGCCGCACTGGTTGCAAATGTTTCCGCCGTCGCC 294 Query 36507 TGGAGTGTTCAGATTATCAGTCCAGCGAAAGCGGTCTTTACCTCCGCAGTTAGGGCAAGG 36566 | ||| | || ||||||||||||||||| |||||||| ||||| | ||||||||| Sbjct 293 TTTCTCGTTGATTTTGTCAGTCCAGCGAAAGCGATCTTTACCGCCGCAATAAGGGCAAGG 234 Query 36567 TTGGTGCTT 36575 ||||| || Sbjct 233 CTGGTGTTT 225 >seq9 Length=117247901 Score = 96.9 bits (106), Expect = 1e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 49811 ATCTGGTTTTCTCCAGGCAGATGACAGGACGCTAACCGGATTCTCAATGATGTAGGTCAC 49870 ||| |||| ||||| || |||||||||||||| |||||||| || ||||| | || Sbjct 108216610 ATCAGGTTGCCTCCACATCGACGACAGGACGCTAACAGGATTCTCGATCATGTATGGAAC 108216669 Query 49871 GCCCAGGGCATCGCCAATATTCGCAGCAATCCGTGCGGTTGCAACAGCCTTCTCCTGGAA 49930 | | ||| ||||||| ||||||||| ||| ||| |||| ||||| | |||||| Sbjct 108216670 GTTAAACCGATCCGCAATATTGGCAGCAATCTTTGCCGTTTCAACCGCCTTTTTCTGGAA 108216729 Query 49931 TAACGGATCGCGCTCACGCTTACTTGCAAAGTG 49963 ||||| || |||||||| ||||||||| Sbjct 108216730 GTCTGGATCACGTTCACGCTTTGCTGCAAAGTG 108216762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161976002230248