Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq228 84.2 3e-11 >seq228 Length=356584 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || ||||| || ||||| | ||||||||||| | ||||| || || || || ||| Sbjct 282327 AAGCAAGCAAAGTCGCAATGGAGACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTT 282386 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA-AAAGATCCAGAAAA 37291 ||||| |||||||| || | ||||| | ||||||||| || ||| ||| || || || Sbjct 282387 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGC-GCAGAAACTGCCGGAGAA 282445 Query 37292 GAAAATACCTTCAAC 37306 || || ||||| || Sbjct 282446 AAATATGCCTTCTAC 282460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592249068573920