Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq6639 129 1e-24 >seq6639 Length=3618 Score = 129 bits (142), Expect = 1e-24 Identities = 144/187 (77%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 23020 GCGTAGATCAGTGCCGGGCTTGGTG-TGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTT 23078 || |||||| || ||||| || | |||| ||||| || ||||| || | || ||| || Sbjct 186 GCATAGATCT-TGGCGGGCAGGGGGGTGGTGTTGGAGAATTCCAGCGTGA-CGTGCCCTT 129 Query 23079 CC-ATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATT 23137 || | | || |||||||| |||||||| |||||||| |||||||||||||| ||||||| Sbjct 128 CCCAGCCCGGCTCCAGCGGGGTGACGTTCACGATGATCCCGCAACGCGCATAGGTCGATT 69 Query 23138 TGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCA 23197 ||||||||||||| || | |||||| ||||| | ||| | |||| ||| |||| Sbjct 68 TGCCGAGGCAGATGACCAGTACGTCGCGCGGCACCCGGAAATATTCCACCGTCCGCGCCA 9 Query 23198 GTGCGAA 23204 | ||||| Sbjct 8 GCGCGAA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897490960171840