Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_017983.1 Length=43788 Score E Sequences producing significant alignments: (Bits) Value seq1835 95.1 3e-15 >seq1835 Length=21661 Score = 95.1 bits (104), Expect = 3e-15 Identities = 172/241 (71%), Gaps = 12/241 (5%) Strand=Plus/Minus Query 2750 CGGCGACACATTTGTGGTTTTTCGTCTCGATCGCTTCGGCCGCAGTCTCAAGGATCTGCT 2809 |||||||||| | || | ||||||||||| |||||||| |||||||| ||||| Sbjct 605 CGGCGACACAATCTGCGTCGTGCGTCTCGATCGGCTCGGCCGCTCGCTCAAGGAACTGCT 546 Query 2810 GAA-ACGCATTGAGCAACTGGAAGA-ACGCGGCGTGGAGTTCCGCAGCATCGCGGACGGA 2867 | | ||| || || || | ||| |||||| ||| |||||| |||| | ||| Sbjct 545 GGAGACG-ATCGA-CATGTTCAAGGCACGCGGGCTGGCGTTCCGG----TCGCTGGAGGA 492 Query 2868 -CTCC-GTAC-CGACAGCG-CCTCCGGCAAACTCGTATTCCACGTGGTCGGTGCCATTGC 2923 | || | || || || || || |||| | || || |||||||| |||||||||| || Sbjct 491 GCGCCTGGACACGTCATCGGCCGCCGGGGAGCTGGTGTTCCACGTCTTCGGTGCCATCGC 432 Query 2924 GCAGTTCGAGCGCAACCTAATCAAGCAGCGCACGCGTGAGGGCTTGGATGCTGCCCGCGC 2983 ||| ||||| ||| || ||| | ||||||| || || ||| | | ||||||||||| Sbjct 431 GCACTTCGAACGCCGGCTGATCGTGGAGCGCACCCGCGACGGCATCGCCGCTGCCCGCGC 372 Query 2984 G 2984 | Sbjct 371 G 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139984791450000