Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_018284.1 Length=42123 Score E Sequences producing significant alignments: (Bits) Value seq1219 102 2e-17 >seq1219 Length=45996 Score = 102 bits (112), Expect = 2e-17 Identities = 182/262 (69%), Gaps = 8/262 (3%) Strand=Plus/Minus Query 27029 TACCCATCATAACACGCTCTCTAATGGTTTCTCTTTCCCACTCTGCCATAGCACCAACTA 27088 ||||||| ||||||| || | | ||||||||||||| | ||||| || |||| | Sbjct 45668 TACCCATAGTAACACGTTCGCCTAGATTTTCTCTTTCCCATTGTGCCAAGGCGGCAACCA 45609 Query 27089 ACGTAACAAACAGTCTACCCATAGCTGTAGATGTATCATAAACTTCAGTAGCACTTCTGA 27148 |||| ||| || | |||||||||||||| ||| ||||||||||| ||||||| ||| | Sbjct 45608 GAGTAATAAAAAGCCGACCCATAGCTGTAGTTGTGTCATAAACTTCTGTAGCAC-TCTTA 45550 Query 27149 ATGCTAC-GTTATTCTGTTCGAATACCTCTAATAAATCAAGTAGATCACGCACATTACGT 27207 | ||| ||||| || || |||| || |||| | ||||| ||| || Sbjct 45549 AATTTACAATTATTTTGCTCAAATATGTCCAATAGCTTGTACAGATCTAAAACAGACCGG 45490 Query 27208 GTAAGCCTGTCTAACTTATACACTAAAACTAAATC---AAACCGT---TTAATATCATTC 27261 ||||| | || | | |||| || | || | ||| ||||| | | ||||| | | Sbjct 45489 GTAAGGCGATCCAGCCTATAAACCAGCACAACATCGATAAACCCTTCCTCAATATGACTG 45430 Query 27262 ATCATACGTTGTAATTCCGGTC 27283 ||||||||||| || | |||| Sbjct 45429 ATCATACGTTGCAACTGAGGTC 45408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134657370243960