Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq13 91.5 3e-13 seq142 84.2 5e-11 >seq13 Length=56485995 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 150675 GCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAAC- 150732 ||||| |||| || ||| || ||| || ||| | || ||| ||||| ||||| || Sbjct 6810689 GCAATCTGTTGAAGCCTATGCTTGGTCGGGGAGAACTGCGATGT-ATCGGGGCAACGACT 6810747 Query 150733 CTACGATGAATATCGTAAACACATTGAAAAAGATGCAGCACTACAGCGTCGTTTCATGAA 150792 ||| ||||||||||||||| ||||||| |||||| | || || | ||||||||| | | Sbjct 6810748 CTA-GATGAATATCGTAAATACATTGAGAAAGATCCTGCCCTGGAACGTCGTTTCCAGCA 6810806 Query 150793 GGTTGATATTGTTGAACCGACACTTGAAGAAAC 150825 |||| || ||| | |||| ||| | ||||| || Sbjct 6810807 GGTTTATGTTGATCAACCAACAGTAGAAGATAC 6810839 >seq142 Length=596339 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 150700 TCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGA 150759 ||| || ||| | || |||||| |||||||| ||||||||||||||| ||||||| Sbjct 578664 TCGGGGAGAACTGCGATGCATCGGGGCAACAACACTGGATGAATATCGTAAATACATTGA 578723 Query 150760 AAAAGATGCAGCACTACAGCGTCGTTTCATGAAGGTTGATATTGTTGAACCGACACTTGA 150819 ||||||| | || || |||||||||| | ||||| || ||| | | || || | || Sbjct 578724 AAAAGATCCTGCTCTGGAGCGTCGTTTTCAGCAGGTTTATGTTGGTCAGCCATCAGTGGA 578783 Query 150820 AGAAAC 150825 ||| || Sbjct 578784 AGATAC 578789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147455892363704