Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq1049 194 2e-44 >seq1049 Length=57459 Score = 194 bits (214), Expect = 2e-44 Identities = 492/742 (66%), Gaps = 31/742 (4%) Strand=Plus/Minus Query 145051 CCGCCTTCTGGGCCAGCGACGCGGCGGTGAAGATGAAGCGCTTGTCGCCCTTCAGGACCT 145110 ||||||||| ||||| || |||||||||||||| |||| ||||||| ||||| |||| Sbjct 5897 CCGCCTTCTCGGCCATGGAGGCGGCGGTGAAGATCGCGCGCCTGTCGCCTTTCAGCACCT 5838 Query 145111 TCAGCCAGGAGGCGACATAGGAGGCGTGATCCTCACGGACTTCCGGGGTCAACCCAAGAA 145170 ||||||| || |||| ||| ||||| || || || || | | | ||||| Sbjct 5837 TCAGCCACGATGCGAGGTAGCTCGCGTGGTCGTCGCGCGGCTCGATGCTGACGCCAAGGT 5778 Query 145171 TGGCGCAGAGGAAGGCCGAGCCCAGTTCGGCGACCAGTTCCTCGGCGGCGTAGGCCTCGT 145230 |||| |||| |||| || || | |||||| ||||||||||| ||||| | |||| Sbjct 5777 CGGCGGCGAGGTAGGCGGACCCGATTTCGGCCACCAGTTCCTCCATCGCGTACCCTTCGT 5718 Query 145231 CCCCGAAGCGCTT---GCCGAACTCGCGGTTCAGGCGGTCCTCGCGACCGGTCCAGTGGA 145287 | || | ||| ||| | |||||| |||||| ||| | |||||||||| Sbjct 5717 CGCCCCATGTCTTGCGGCCAAGATCGCGGGCGAGGCGGGTGTCGTGTTTCGTCCAGTGGA 5658 Query 145288 CGAACTCGTGGCCGAGGGTGGCGTAGTAGCTCTCCTCGTCGCGGAAGGCGTCGAACTGGG 145347 || ||| || |||| ||| ||| | || || | ||| | |||||| | Sbjct 5657 CGGCCTCATGCGCGAGAACGGCCGCGTATCCTTCGGCGGTGAAAAAGTCCTCGAACGCCG 5598 Query 145348 GCATCTGGATGAAGTC-CAGGTGCGGCGAGAAGAAGGCCCGATGGCCGCCGTGGCGCACC 145406 ||||||||||||| || | || | ||| | ||||||| || |||||||| || | Sbjct 5597 GCATCTGGATGAAATCGCCGGCGGGGC-TGTAGAAGGCGCGGCTTCCGCCGTGACGAATG 5539 Query 145407 TCGGCGCCCGTGGCGGCGAAGAACTTCTCGACCGCCGCGTTGCGCTCCAGGACCCGCTTG 145466 |||||||| |||||||||||||| ||| |||| | || || | |||| Sbjct 5538 TCGGCGCCGGTGGCGGCGAAGAAGGCGTCGGCCGC-----TTCGATC-----CGTGCTT- 5490 Query 145467 GCTTCCTCGGCGGGCGTCGCCGGGGCCGGGGCGGGCTTCTGGTAGAAGCGCTCGGGCAGG 145526 |||| ||| | ||||| | | ||||| | ||| ||| || |||||| Sbjct 5489 ------TCGGGGGGAG-GTCCGGGCGCTCGACGGGCGTGGGGTGGAATTGCGTCGGCAGG 5437 Query 145527 CCGTCGATCTGCTCGACGTTGAACACCAGATAGGACTTCAGGAACGGGAT----CATCCG 145582 ||| ||||| ||| |||||| || || ||||| ||||||||| | | || Sbjct 5436 TTGTCAATCTGGTCGCAGTTGAAGACGCTGTATCCCTTCATGAACGGGATGCGGCGTTCG 5377 Query 145583 CTCGACGTCCTTGCCGTTGGCGTCCTTCTCGGTCTTCTTGAACTTCGAGGCGTAGACGAT 145642 ||| || || |||||| ||| ||||||| || ||||||||||| Sbjct 5376 CTC-TCGACC---CCGTTGCTGTCAGTCTCGGTGCGGGCGATAGCGTTGGCGTAGACGAC 5321 Query 145643 CAGTTCGGACTTCTCGCCCTTGCGGACCTGACCACCCAGGTCCCTGGCTTGGTTGTAGGT 145702 || ||| |||||||||||||||||||| || || ||| | ||||||| ||| || Sbjct 5320 AAGGGCGGCTTTCTCGCCCTTGCGGACCTGCCCGCCGAGGGCGGCGGCTTGGCGGTACGT 5261 Query 145703 CATCCAGGTCGGGTTGGTGTAGCCGCGCTCCTGGGCGGCGGCCCACAGGAGGACCACGTT 145762 ||||||| | | | | ||||| | |||| || | ||||||||||| | ||| Sbjct 5260 CATCCAGTGCTGCGAGCGGAAGCCGTTCGCCTGCGCCTCCATCCACAGGAGGATCGTGTT 5201 Query 145763 GATCCCGGTGTAGCGCTGGCCG 145784 || || ||| ||| |||| Sbjct 5200 CATGCCTCGATAGGGCTCGCCG 5179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690065082033600