Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq3054 96.9 6e-15 seq2506 93.3 8e-14 seq1328 84.2 4e-11 >seq3054 Length=9481 Score = 96.9 bits (106), Expect = 6e-15 Identities = 185/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 110917 CCGGTCGAGCCGAAGCCGCCCGTGCCACGCTCGGTCTGGTCAAGCTCCGCAACGACGTCG 110976 ||||| |||||||||||||| | ||| ||| || | | ||| ||| | ||| Sbjct 2728 CCGGTGGAGCCGAAGCCGCCGGCGCCGCGCGGCGTGGCGCCGAGCGCCGTGGCCGGTTCG 2787 Query 110977 AAACGGATGCGGACATAGGGCGCGAAGACGGCCTGGGCAATGCGGTCGCCGCGATTGATG 111036 ||||| || || |||||||| ||| |||||| ||||| |||||| ||| Sbjct 2788 AAACGCGCCCGCACCACGGGCGCGACCACGATCTGGGCGATGCGCTCGCCGTTGCGGATC 2847 Query 111037 ACGAACGGATTGCGGCCGTGGTTGATCAGGATCACCTTGATCTCGCCGCGATAGTCGCTG 111096 ||| || | | || | |||| || | ||||| | ||||||||||||||||||| Sbjct 2848 GTGAAGGGTTCGGCCCCCAGATTGACGAGTAGCACCTCCACCTCGCCGCGATAGTCGCTG 2907 Query 111097 TCGACGGTACCGGGCGAATTCAGGACAGTGATAGACG-ACTTGGCGGCGAGGCCCGAGCG 111155 ||||| || ||||||| || | ||| |||| | || | |||||| || ||||| || Sbjct 2908 TCGACCGTTCCGGGCGCGTTGACGACGGTGA-CGCCGTTCCGGGCGGCCAGCCCCGAACG 2966 Query 111156 CGGCCGGACTTGCAGTTCCAGGCCCGCCGG 111185 || || || |||| || | |||| ||| Sbjct 2967 GGGGCGCACCTGCATCTCGAACCCCGGCGG 2996 >seq2506 Length=12822 Score = 93.3 bits (102), Expect = 8e-14 Identities = 221/325 (68%), Gaps = 13/325 (4%) Strand=Plus/Minus Query 70923 TCGGCCCCGCCGGCACCGGCAAGACCTATATCGCCGCCCGCATCGCGGCGCAGCG-CAAG 70981 ||||||||||||||||||||||||||||| |||||| | | ||| || |||| | | Sbjct 9876 TCGGCCCCGCCGGCACCGGCAAGACCTATCTCGCCGTCGCCCACGCCGCCCAGCTTCTGG 9817 Query 70982 ATGGCGGGCCATGTCGACAAGATCATCATCACTCGCGTGAACGTC--TCCAAGCGCGAGC 71039 | |||||| | || || | ||||||| || || | || | | | ||| | | Sbjct 9816 AGCGCGGGC-AGGTGGA---GCGCATCATC-CTGTCGCGGCCGGCCGTGGAGGCGGGCGA 9762 Query 71040 ACGCCCTGGGCTTTCTGCCGGGCAACATCGACGCCAAGATGAAGCCCTGGATGACTCCGG 71099 || | | ||||| ||||||||| |||| | | ||| | | |||| || ||| Sbjct 9761 GCGGC-TCGGCTTCCTGCCGGGCGACATGAAGGAGAAGGTCGACCCCTATCTGCGGCCGC 9703 Query 71100 TTGTCGAAGGCCTGCGTGCCGAGGTGTCGGCCAAGGTCATGGACACCTGGAAGGCCGCC- 71158 | ||| | || | | | || ||||| || |||| | | ||||| Sbjct 9702 TCTACGACGCGCTCTACGACATGATGCCGGCCGAGAAGGTGGAGCGCGCCATCGCCGCGC 9643 Query 71159 -GGCGAGTTCGAGATCGTGCCCTTCGAGTTCATGCGCGGGCGCACCTTCGACAACGCCTT 71217 ||||| ||||||||| ||| ||| ||||||||||||||||| ||| ||||||| Sbjct 9642 AGGCGA--TCGAGATCGCGCCGCTCGCCTTCATGCGCGGGCGCACGCTCGCCAACGCCGC 9585 Query 71218 CGTGATCCTCGACGAGGCTCAGAAC 71242 ||| |||||||||||||| |||||| Sbjct 9584 CGTCATCCTCGACGAGGCGCAGAAC 9560 >seq1328 Length=39807 Score = 84.2 bits (92), Expect = 4e-11 Identities = 200/295 (68%), Gaps = 8/295 (3%) Strand=Plus/Minus Query 110916 TCCGGTCGAGCCGAAGCCGCCCGTGCCACGCTCGGTCTGGTCAAGCTCCGCAACGACGTC 110975 ||| |||||||||||||| |||| || ||| | || | ||| ||| | | || | || Sbjct 22216 TCCCGTCGAGCCGAAGCCCCCCGCACCGCGCACCGTGTCGTCGAGCGCGTCGACCTCCTC 22157 Query 110976 GAAACGGATGC--GGA-CATAGGGCGCGAAGACGGCCTGGGCAATGCGGTCGCCGCGATT 111032 ||| || || ||| || ||| ||| ||| || || ||||| |||||||| Sbjct 22156 GAA--GGTCGCCCGGAGCACCGGG-GCGGGGACCAGTTGCGCGATGCGTTCGCCGCGCCG 22100 Query 111033 GATGACGAACGGATTGCGGCCGTGGTTGATCAGGATCACCTTGATCTCGCCGCGATAGTC 111092 | ||||||| | | ||| | |||| ||||| ||||| | ||||||||||||||| Sbjct 22099 CACCTCGAACGGCTCCTGCCCGAGATTGACGAGGATGACCTTCACCTCGCCGCGATAGTC 22040 Query 111093 GCTGTCGACGGTACCGGGCGAATTCAGGACAGTGATAGACG-ACTTGGCGGCGAGGCCCG 111151 ||||| ||| || |||| || ||| |||| | || ||| || || |||| Sbjct 22039 CGCGTCGATGGTGCCCGGCGTGTTGAGGCAGGTGA-CGCCGCGCTTCAGCGCCAGCCCCG 21981 Query 111152 AGCGCGGCCGGACTTGCAGTTCCAGGCCCGCCGGCAGGGCGACCGTGACGCCGGT 111206 | ||||| || || |||| || |||| ||||| | |||| | || ||||| Sbjct 21980 ATCGCGGGCGCACCTGCACCTCGTGGCCGGCCGGGATCGCGATGGCGAAACCGGT 21926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895663969112160