Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq1049 214 3e-50 seq2506 87.8 3e-12 >seq1049 Length=57459 Score = 214 bits (236), Expect = 3e-50 Identities = 578/873 (66%), Gaps = 45/873 (5%) Strand=Plus/Minus Query 149200 CCGCCTTCTGGGCCAGCGACGCGGCGGTGAAGATGAAGCGCTTGTCGCCCTTCAGGACCT 149259 ||||||||| ||||| || |||||||||||||| |||| ||||||| ||||| |||| Sbjct 5897 CCGCCTTCTCGGCCATGGAGGCGGCGGTGAAGATCGCGCGCCTGTCGCCTTTCAGCACCT 5838 Query 149260 TCAGCCAGGAGGCGACATAGGAGGCGTGGTCTTCGCGGACTTCCGGGGTCAGGCCGAGGA 149319 ||||||| || |||| ||| |||||||| ||||| || | | | ||| ||| Sbjct 5837 TCAGCCACGATGCGAGGTAGCTCGCGTGGTCGTCGCGCGGCTCGATGCTGACGCCAAGGT 5778 Query 149320 TGGCGCAGAGGAAGGCCGAGCCCAGTTCGGCGACCAGTTCCTCGGCGGCGTAGGCCTCGT 149379 |||| |||| |||| || || | |||||| ||||||||||| ||||| | |||| Sbjct 5777 CGGCGGCGAGGTAGGCGGACCCGATTTCGGCCACCAGTTCCTCCATCGCGTACCCTTCGT 5718 Query 149380 CACCGAAGCGCTT---GCCGAACTCGCGGTTCAGGCGGTCCTCGCGACCGGTCCAGTGGA 149436 | || | ||| ||| | |||||| |||||| ||| | |||||||||| Sbjct 5717 CGCCCCATGTCTTGCGGCCAAGATCGCGGGCGAGGCGGGTGTCGTGTTTCGTCCAGTGGA 5658 Query 149437 CGAACTCGTGGCCGAGGGTGGCGTAGTAGCTCTCCTCGTCGCGGAAGGCGTCGAACTGGG 149496 || ||| || |||| ||| ||| | || || | ||| | |||||| | Sbjct 5657 CGGCCTCATGCGCGAGAACGGCCGCGTATCCTTCGGCGGTGAAAAAGTCCTCGAACGCCG 5598 Query 149497 GCATCTGGATGAAGTC-CAGGTGCGGCGAGAAGAAGGCCCGATGGCCGCCGTGGCGCACC 149555 ||||||||||||| || | || | ||| | ||||||| || |||||||| || | Sbjct 5597 GCATCTGGATGAAATCGCCGGCGGGGC-TGTAGAAGGCGCGGCTTCCGCCGTGACGAATG 5539 Query 149556 TCGGCGCCCGTGGCGGCGAAGAACTTCTCGACCGCCGCGTTGCGCTCCAGGACCCGCTTG 149615 |||||||| |||||||||||||| ||| |||| | || || | |||| Sbjct 5538 TCGGCGCCGGTGGCGGCGAAGAAGGCGTCGGCCGC-----TTCGATC-----CGTGCTT- 5490 Query 149616 GCTTCCTCGGCGGGCGTCGCCGGGGCCGGGGCGGGCTTCTGGTAGAAGCGCTCGGGCAGA 149675 |||| ||| | ||||| | | ||||| | ||| ||| || ||||| Sbjct 5489 ------TCGGGGGGAG-GTCCGGGCGCTCGACGGGCGTGGGGTGGAATTGCGTCGGCAGG 5437 Query 149676 CCGTCGATCTGCTCGACGTTGAACACCAGATAGGACTTCAGGAACGGGAT----CATCCG 149731 ||| ||||| ||| |||||| || || ||||| ||||||||| | | || Sbjct 5436 TTGTCAATCTGGTCGCAGTTGAAGACGCTGTATCCCTTCATGAACGGGATGCGGCGTTCG 5377 Query 149732 CTCGACGTCCTTGCCGTTCGAGTCCTTCTCGGTCTTCTTGAACTTGGAGGCGTAGACGAT 149791 ||| || || ||||| ||| ||||||| || | ||||||||||| Sbjct 5376 CTC-TCGACC---CCGTTGCTGTCAGTCTCGGTGCGGGCGATAGCGTTGGCGTAGACGAC 5321 Query 149792 CAGTTCGGACTTCTCGCCCTTGCGGACCTGACCACCCAGGTCCCTGGCTTGGTTGTAGGT 149851 || ||| |||||||||||||||||||| || || ||| | ||||||| ||| || Sbjct 5320 AAGGGCGGCTTTCTCGCCCTTGCGGACCTGCCCGCCGAGGGCGGCGGCTTGGCGGTACGT 5261 Query 149852 CATCCAG-GTTGGGTTGGTGTAACCGCGCTCCTGCGCGGCGGCCCACAGGAGGACCACGT 149910 ||||||| | || | | | | ||| | ||||||| | ||||||||||| | || Sbjct 5260 CATCCAGTGCTGCG-AGCGGAAGCCGTTCGCCTGCGCCTCCATCCACAGGAGGATCGTGT 5202 Query 149911 TGATCCCGGTGTAGCGCTGGCCCGTCACGCGGCGCGGATAGATCGCCATGCCAGCCGAGG 149970 | || || ||| ||| | |||| |||||| | | ||| || || || Sbjct 5201 TCATGCCTCGATAGGGCTCG-CCGT----TGGCGCGCAAGGGCCGC--TG-----CGCGG 5154 Query 149971 CGCCGCCGGGAGCCGACCACGGCTTCAACCAGGGACGCACGCCAGCGTCGAGCGCGGCGA 150030 | ||| || ||| |||| || ||| || ||| |||| || || ||| ||| | Sbjct 5153 CATTTCCGTTCGCGCCCCATGGCTGCATCCACGGGCGCGCGCCCGCCTCAAGCTGGGCCA 5094 Query 150031 CGATCTTGTCGGTGATCTTCTGATAGAGGTCGA 150063 | ||||||||||||| ||| |||| ||||| Sbjct 5093 CAATCTTGTCGGTGACGCGCTGGTAGACGTCGA 5061 >seq2506 Length=12822 Score = 87.8 bits (96), Expect = 3e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 54540 GATCGAGTTCGCCTCGTTCGAGCACATGCGCGGCCGGACCTTCGCCGAGTGCTGCGTCCT 54599 ||||||| |||| || ||| ||||||||| || || ||||| | | |||| | Sbjct 9638 GATCGAGATCGCGCCGCTCGCCTTCATGCGCGGGCGCACGCTCGCCAACGCCGCCGTCAT 9579 Query 54600 CCTCGACGAGGCGCAGAACGCCGACTACAAGGACCTGAAGATGGTCCTGACCCGCTGGGG 54659 ||||||||||||||||||| || | || | | |||||||| ||||||| || ||| Sbjct 9578 CCTCGACGAGGCGCAGAACACCACCACCATGCAGATGAAGATGTTCCTGACGCGTCTGGG 9519 Query 54660 CGAGAACGCCC 54670 ||||||||||| Sbjct 9518 CGAGAACGCCC 9508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709640443335040