Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq1049 223 5e-53 seq2506 84.2 3e-11 >seq1049 Length=57459 Score = 223 bits (246), Expect = 5e-53 Identities = 573/868 (66%), Gaps = 35/868 (4%) Strand=Plus/Minus Query 147973 CCGCCTTCTGGGCCAGCGACGCGGCGGTGAAGATGAAGCGCTTGTCGCCCTTCAGGACCT 148032 ||||||||| ||||| || |||||||||||||| |||| ||||||| ||||| |||| Sbjct 5897 CCGCCTTCTCGGCCATGGAGGCGGCGGTGAAGATCGCGCGCCTGTCGCCTTTCAGCACCT 5838 Query 148033 TCAGCCAGGAGGCGACATAGGAGGCGTGGTCTTCGCGGACTTCCGGGGTCAGGCCGAGGA 148092 ||||||| || |||| ||| |||||||| ||||| || | | | ||| ||| Sbjct 5837 TCAGCCACGATGCGAGGTAGCTCGCGTGGTCGTCGCGCGGCTCGATGCTGACGCCAAGGT 5778 Query 148093 TGGCGCAGAGGAAGGCCGAGCCCAGTTCGGCGACCAGTTCCTCGGCGGCGTAGGCCTCGT 148152 |||| |||| |||| || || | |||||| ||||||||||| ||||| | |||| Sbjct 5777 CGGCGGCGAGGTAGGCGGACCCGATTTCGGCCACCAGTTCCTCCATCGCGTACCCTTCGT 5718 Query 148153 CACCGAAGCGCTT---GCCGAACTCGCGGTTCAGGCGGTCCTCGCGGCCGGTCCAGTGGA 148209 | || | ||| ||| | |||||| |||||| ||| | |||||||||| Sbjct 5717 CGCCCCATGTCTTGCGGCCAAGATCGCGGGCGAGGCGGGTGTCGTGTTTCGTCCAGTGGA 5658 Query 148210 CGAACTCGTGGCCGAGGGTGGCGTAGTAGCTCTCCTCGTCGCGGAAGGCGTCGAACTGGG 148269 || ||| || |||| ||| ||| | || || | ||| | |||||| | Sbjct 5657 CGGCCTCATGCGCGAGAACGGCCGCGTATCCTTCGGCGGTGAAAAAGTCCTCGAACGCCG 5598 Query 148270 GCATCTGGATGAAGTC-CAGGTGCGGCGAGAAGAAGGCCCGGTGACCGCCGTGGCGCACC 148328 ||||||||||||| || | || | ||| | ||||||| ||| |||||||| || | Sbjct 5597 GCATCTGGATGAAATCGCCGGCGGGGC-TGTAGAAGGCGCGGCTTCCGCCGTGACGAATG 5539 Query 148329 TCGGCGCCCGTGGCGGCGAAGAACTTCTCGACCGCCGCGTTGCGCTCCAGGACCCGCTTG 148388 |||||||| |||||||||||||| ||| |||| | || || | |||| Sbjct 5538 TCGGCGCCGGTGGCGGCGAAGAAGGCGTCGGCCGC-----TTCGATC-----CGTGCTT- 5490 Query 148389 GCTTCCTCGGCGGGCGTCGCCGGCGCCGGGGCGGGCTTCTGGTAGAAGCGCTCGGGCAGG 148448 |||| ||| | | |||| | | ||||| | ||| ||| || |||||| Sbjct 5489 ------TCGGGGGGAGGTCCGGGCG-CTCGACGGGCGTGGGGTGGAATTGCGTCGGCAGG 5437 Query 148449 CCGTCGATCTGCTCGACATTGAACACCAGATAGGACTTCAGGAACGGGATCATCCGTTCG 148508 ||| ||||| ||| ||||| || || ||||| ||||||||| |||||| Sbjct 5436 TTGTCAATCTGGTCGCAGTTGAAGACGCTGTATCCCTTCATGAACGGGATGCGGCGTTCG 5377 Query 148509 ACGTCCTTGCCGTTGGCGTCCTTCTCGGTCTTCTTGAACTTCGAGGCGTAGACGATCAGT 148568 || |||||| ||| ||||||| || ||||||||||| || Sbjct 5376 CTCTCGACCCCGTTGCTGTCAGTCTCGGTGCGGGCGATAGCGTTGGCGTAGACGACAAGG 5317 Query 148569 TCGGACTTCTCGCCCTTGCGGACCTGACCACCCAGGTCCCTGGCTTGGTTGTAGGTCATC 148628 ||| |||||||||||||||||||| || || ||| | ||||||| ||| |||||| Sbjct 5316 GCGGCTTTCTCGCCCTTGCGGACCTGCCCGCCGAGGGCGGCGGCTTGGCGGTACGTCATC 5257 Query 148629 CAGGTCGGGTTGGTGTAGCCGCGCTCCTGGGCGGCGGCCCACAGGAGGACCACGTTGATC 148688 ||| | | | | ||||| | |||| || | ||||||||||| | ||| || Sbjct 5256 CAGTGCTGCGAGCGGAAGCCGTTCGCCTGCGCCTCCATCCACAGGAGGATCGTGTTCATG 5197 Query 148689 CCGGTGTAGCGCTGGCCGGTCACCCGGCGGGGATAGATCGCCATGCCGGCCGAGGCGCCG 148748 || ||| ||| |||| | |||| | | | ||| || || ||| Sbjct 5196 CCTCGATAGGGCTCGCCGTT-----GGCGCGCAAGGGCCGC--TG-----CGCGGCATTT 5149 Query 148749 CCGGGAGCCGACCACGGCTTCAACCAGGGACGCACGCCAGCGTCGAGCGCGGCGACGATC 148808 ||| || ||| |||| || ||| || ||| |||| || || ||| ||| || ||| Sbjct 5148 CCGTTCGCGCCCCATGGCTGCATCCACGGGCGCGCGCCCGCCTCAAGCTGGGCCACAATC 5089 Query 148809 TTGTCGGTGATCTTCTGATAGAGGTCGA 148836 |||||||||| ||| |||| ||||| Sbjct 5088 TTGTCGGTGACGCGCTGGTAGACGTCGA 5061 >seq2506 Length=12822 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 53689 GATCGAGTTCGCCTCGTTCGAGCACATGCGGGGCCGGACCTTCGCCGAGTGCTGCGTCCT 53748 ||||||| |||| || ||| |||||| || || || ||||| | | |||| | Sbjct 9638 GATCGAGATCGCGCCGCTCGCCTTCATGCGCGGGCGCACGCTCGCCAACGCCGCCGTCAT 9579 Query 53749 CCTCGACGAGGCGCAGAACGCCGACTACAAGGACCTGAAGATGGTCCTGACCCGCTGGGG 53808 ||||||||||||||||||| || | || | | |||||||| ||||||| || ||| Sbjct 9578 CCTCGACGAGGCGCAGAACACCACCACCATGCAGATGAAGATGTTCCTGACGCGTCTGGG 9519 Query 53809 CGAGAACGCCC 53819 ||||||||||| Sbjct 9518 CGAGAACGCCC 9508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701282999118080