Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq25 84.2 4e-11 seq2 84.2 4e-11 >seq25 Length=50193149 Score = 84.2 bits (92), Expect = 4e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 222106 GTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGC 222165 ||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||| || || Sbjct 26656250 GTTCTTCCTCAGATCCAAAAACTCAAAAATGTCAGCATGCCATGGCTCCAAATACACAGC 26656191 Query 222166 CAGAGCGCC 222174 | ||| || Sbjct 26656190 AAAAGCACC 26656182 >seq2 Length=106994729 Score = 84.2 bits (92), Expect = 4e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 222106 GTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGC 222165 ||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||| || || Sbjct 29496187 GTTCTTCCTCAGATCCAAAAACTCAAAAATGTCAGCATGCCATGGCTCCAAATACACAGC 29496128 Query 222166 CAGAGCGCC 222174 | ||| || Sbjct 29496127 AAAAGCACC 29496119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928738586597120