Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_019509.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq5259 114 4e-21 >seq5259 Length=4105 Score = 114 bits (126), Expect = 4e-21 Identities = 311/461 (67%), Gaps = 24/461 (5%) Strand=Plus/Plus Query 40664 TTTTATCAGAATGGAATGTCGTCGTCGAAATCCATTGGCGGTTGATTATTCTGTTTAGGC 40723 ||||||||||||||||| || || ||||||||||||||||| | ||| || |||| Sbjct 3467 TTTTATCAGAATGGAATATCATCATCGAAATCCATTGGCGGCTCATTGTTTTGTT----- 3521 Query 40724 TGCTCGCTTTGCTGCGGCTGTTGAGGTCGCCCCCAGCCGCTTTGCTGATTGCCGCCTCCA 40783 || | | || ||||||||| | || || || | | | || |||| | | Sbjct 3522 -GCGCTTTCTGTTGCGGCTGTCGCTGTTGCTG--AGGAGGTC-GTTG-TTGCTG--TGGT 3574 Query 40784 GTCTGCTGCGCGCCGCCGCGCTGGCTGAAATTG-AGGTTAGCAAAACCGCCAGGCGATAA 40842 | || || | | ||||||||||| |||||| ||||||||||| || || | || Sbjct 3575 G-CT--TGACCTTCCCCGCGCTGGCT-AAATTGCAGGTTAGCAAATCCAGCACTTGTTAG 3630 Query 40843 CGTCAGATAAACCTTACCGTTGTGCTCATTGCTTTCCACTCTCAGCGTGTCGCAGGAAA- 40901 ||| ||||| | ||||||| ||||||||| || | | | | ||||| || | Sbjct 3631 CGTGTTATAAATTTGTCCGTTGTACTCATTGCTATCAATGCGTAACTGATCGCAAGACAC 3690 Query 40902 TGGAGACAACCTTGCCAAGCTGAAATGCTTCATCGTACCAGCCGCGAAGCGCGTCGTTTT 40961 | || ||||| || || | ||| || || || ||||| | ||||| ||| Sbjct 3691 TAGA-ACAACTTTACCGACCTGGAACGCATCGAGATACCATTTATTCATTCCGTCGCTTT 3749 Query 40962 TGGCATTGAAAAAGAATTTGTAGTTGGTGTATTGCGCGTTTCCTTCACGGTCTTTGAACC 41021 ||||||| || || || ||||| ||||||||||| || ||||| || ||||| || Sbjct 3750 TGGCATTAAAGAAAAACTTGTAATTGGTGTATTGTCGATTACCTTCGCGATCTTTATACG 3809 Query 41022 GCTCAGAGAGCTCCACGA--TATAAAGCTTCCCGTTCGGCCCCTCTTTGGTAAAAGGCTC 41079 || | | || |||| ||||||| | ||||| | || | || | ||||||| Sbjct 3810 ATTCCGCTAATTCAACGATGTATAAAG--TTCCGTTTGCGCCTTGCTTAACATAAGGCTC 3867 Query 41080 CTTTCGGATCTCGCCGGTAATAATGTGCATTTATTTCTCCT 41120 || || || || || || |||| ||||| |||||| |||| Sbjct 3868 TTTGCGAATTTCACCAGTGATAACGTGCA-TTATTTTTCCT 3907 Score = 91.5 bits (100), Expect = 5e-14 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 37760 TACCAGAAAGAGGATGTACTGCCATACATGGGCGGCATGTGGAAGGATGCTTTACAGTCT 37819 || || ||||| || || | ||| | ||| ||||||||||| | | || ||| | Sbjct 132 TATCAAAAAGAAGAAGTGATCCCAAAGATGCGCGGCATGTGGCAAGCGGCATTAATGAAA 191 Query 37820 ATTTGCGGGCTGTCTCCTCAGGTA---TTCAACAAAAAGCATCAGCCATGCCCGCACTGC 37876 |||||| | |||||| || || ||| ||| || ||||| ||||| | ||| Sbjct 192 CTTTGCGATAT---TCCTCAATTAACCTTTAACGGAAAACACCAGCCTTGCCCTTATTGC 248 Query 37877 GGCGGCAAAGACCGCTTTCGCTGGACTGACAACCTGGACAAGCCTGGAGACGGCGGCGCG 37936 ||||| ||||| |||||||||||||||||||| | || || || |||||||| Sbjct 249 GGCGGTAAAGATCGCTTTCGCTGGACTGACAAAATCAACGAGAAAGGCGACGGCGGAAAC 308 Query 37937 ATCTGTAACTCGTGCGGAAACGATACCGGAATCGG 37971 || || ||| |||||| || ||| | || ||||| Sbjct 309 ATTTGCAACCAGTGCGGCAATGATTCAGGGATCGG 343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157032539309328