Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq1835 84.2 3e-11 >seq1835 Length=21661 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 199781 TCGGTGATTAGCGCAGT-TGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCGA 199839 |||| || | |||||| ||||||||| ||||||||||||||| ||||| ||||||||| Sbjct 20486 TCGGGGAGTGGCGCAGGCTGGTAGCGCACCTGGTTTGGGACCAGGGGGTCGCAGGTTCGA 20545 Query 199840 GTCCTGTATCACCGACCA 199857 |||||| || ||||||| Sbjct 20546 ATCCTGTCTCCCCGACCA 20563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741364815238240