Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq1219 102 3e-17 >seq1219 Length=45996 Score = 102 bits (112), Expect = 3e-17 Identities = 275/416 (66%), Gaps = 6/416 (1%) Strand=Plus/Minus Query 28096 ACACGTTCTGCCGTG-TTCTCCCGTTCCCATTGCGCTAAAGCGGCGACAAATGTAATAAA 28154 |||||||| ||| | || || | ||||||||| || || ||||| || | |||||||| Sbjct 45657 ACACGTTC-GCCTAGATTTTCTCTTTCCCATTGTGCCAAGGCGGCAACCAGAGTAATAAA 45599 Query 28155 CATGCGCCCGGTGGCAGTAGTGGTGTCGTAGACTTCGGTTGCTGATTTAAACTTGCAGTC 28214 | || || | || ||||| ||||| || ||||| || || ||||| || || | Sbjct 45598 AAGCCGACCCATAGCTGTAGTTGTGTCATAAACTTCTGTAGCACTCTTAAATTTACAATT 45539 Query 28215 ATGTTCATCGAATAGTTTTAAAAGGTTGTGCAAGTCCAAAACGGAACGGGTCAGGCGGTC 28274 || || || |||| | || || |||| || || ||||| || ||||| ||||| || Sbjct 45538 ATTTTGCTCAAATATGTCCAATAGCTTGTACAGATCTAAAACAGACCGGGTAAGGCGATC 45479 Query 28275 TAAACGATACACCAACACGCAATCAATCAGCCCTTGTTGGATGTTTTCAATCATCCGTTT 28334 | | ||| |||| ||| ||| || | ||||| | || | ||||| |||| Sbjct 45478 CAGCCTATAAACCAGCACAACATCGATAAACCCTTCCTCAATATGACTGATCATACGTTG 45419 Query 28335 CATCGCCGGCCGATCCAAGTCTTTAGCACTGTACCCGTCATCAATATAAAATCCTTCAAT 28394 || | || || || | |||||| || || || | ||| ||||| | | Sbjct 45418 CAACTGAGGTCGTTCTGTATTTTTAGCGGATATGCCTTCGTCTACATAGAATCCAACTAC 45359 Query 28395 GTCCCATCCTTGCGAAACACAATAGGCGTGGAGT--TTTTCCTTTTGCATTTGGATGGAA 28452 ||||| ||| |||||| ||| || || | | || || | |||| | || ||| Sbjct 45358 ATCCCAATTTTGAGAAACAGTATATGCTTGTAATCGTTCTCGCTGTGCAGAT--ATTGAA 45301 Query 28453 TACCCCTCCCGCGCTTGGTCTTCCGTGCTCACGCGGATATACAATGCGGTTCGCAT 28508 || || || |||| |||||||||||||| | ||| || | ||| |||| ||| Sbjct 45300 TAACCTTCGTTAACTTGTTCTTCCGTGCTCACTCTGATGTAAATTGCTGTTCTCAT 45245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157733263179672