Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_019725.1 Length=50552 Score E Sequences producing significant alignments: (Bits) Value seq5259 116 1e-21 seq9 80.6 9e-11 >seq5259 Length=4105 Score = 116 bits (128), Expect = 1e-21 Identities = 195/278 (70%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 39048 TCCATTGCCCCTGCAATCTCAGTCTCTTTGCTTTGATAGTACCGAAGCGTCTCGGCAACG 39107 || ||||| | |||| ||| ||||||||||| ||||| || || || || || || Sbjct 1672 TCAATTGCTTCCTCAATTCCAGGTTCTTTGCTTTGGTAGTAACGCAGAGTTTCCGCTACA 1613 Query 39108 TTTTGAGCCAATCCGTTAACAGTCAGTGAATCGTTAAGCAAGATCACATACTTTCCGTCA 39167 | ||| |||| ||| | ||||| || || || || | || ||||||||| ||| ||| Sbjct 1612 TCTTGCGCCATTCCATCGACAGTTAGCGAGTCATTCAACAGGATCACATAATTTACGTTT 1553 Query 39168 GCGGCAGTCTGACCATCAGTAGAGATAGCCTTTAACTCTGTGTCGCTCACGATGTCGCTG 39227 | | | || || ||||| ||| || || | ||||| ||||| || || |||||| Sbjct 1552 TCTACTGGCTCGCCGTCAGTCTGGATCGCTTTCATTTCTGTATCGCTTACAATATCGCTG 1493 Query 39228 ATTACCGCCAG-CTTAATCGGTTGCTCTAGGAATACGATAGTTGCACCGACTCTAATCAG 39286 || |||||||| |||| | || | || |||||||| ||||| || | ||| || Sbjct 1492 ATAACCGCCAGTTTTAAAGGAGTGGT-TAAAAATACGATTGTTGCGCCAGTGCGAATAAG 1434 Query 39287 AGCAAGCTGATCTTTCCATTTTGTGTCGGTTCC-GTGA 39323 || |||| | || |||||||||| | || || |||| Sbjct 1433 AGAAAGCGGCTCACGCCATTTTGTGCCAGTACCAGTGA 1396 Score = 98.7 bits (108), Expect = 3e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40167 CATCAACCAACCTATCCCGGAGTCGTTACCGCATGAGTTGCAGATCGCGCCGCCGTCGCC 40226 ||| ||| | || ||||| || || || ||||| |||||| || ||||||||||| Sbjct 353 CATGAACAATCCGATCCCTGAATCATTGCCGCACTGGTTGCAAATGTTTCCGCCGTCGCC 294 Query 40227 TGGAGTGTTAAGATTGTCAGTCCAGCGAAAGCGGTCCTTACCTCCGCAGTTAGGGCAGGG 40286 | ||| | |||||||||||||||||||| || ||||| ||||| | |||||| || Sbjct 293 TTTCTCGTTGATTTTGTCAGTCCAGCGAAAGCGATCTTTACCGCCGCAATAAGGGCAAGG 234 Query 40287 CTGGTGTTT 40295 ||||||||| Sbjct 233 CTGGTGTTT 225 Score = 98.7 bits (108), Expect = 3e-16 Identities = 166/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 39619 CGATCACCTTTATACCTGTACGCAACCATTTCTAAGTTTTCAGGAGTGAAGCAGGCCCAT 39678 ||||| ||||| || ||||| | ||| ||||| | ||| ||| | ||| || |||||| Sbjct 953 CGATCTCCTTTGTATCTGTATGAAACAATTTCAAGATTTGAAGGTGAGAAACACGCCCAT 894 Query 39679 ACCTCTTGCTTTGT-GTGAAATGCAATATGCTGAGCATCAATCCAATTAAGGCATAAGTA 39737 || ||||| || | | || | |||| || ||||||||||||| || ||| | ||| Sbjct 893 ACTTCTTGACCCGTCGCCAGGTGTA-TATGTTGCGCATCAATCCAATCAACGCAAAGGTA 835 Query 39738 GATCGCCTTCTCAGTTTTACCAGTCACGGCAACCGAGCAACTCGTATATTTCTTCGCGTA 39797 || | || ||||| || ||||| || ||||| | | ||| || | |||||||| Sbjct 834 AATTGTTTTGTCAGTCTTGCCAGTTACCGCAACGCTTCCGCGCGTGTAATCTTTCGCGTA 775 Query 39798 AAATGATTCTCTT-CCTTCCTCATCAATAATCAAAATATTGCAAAACTCATCATC 39851 ||| | || || |||||||||| | | | ||||||||| | |||||||| Sbjct 774 AAA-ACTGCTTTTACCTTCCTCATTGACGAAAAGAATATTGCACATATCATCATC 721 >seq9 Length=117247901 Score = 80.6 bits (88), Expect = 9e-11 Identities = 108/149 (72%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 2733 GGTTTTCTCCACGCAGACGACAGGACGCTTACCGGATTCTCAATGATGTAAGTCACG-CC 2791 |||| |||||| |||||||||||||| || |||||||| || ||||| | ||| Sbjct 108216614 GGTTGCCTCCACATCGACGACAGGACGCTAACAGGATTCTCGATCATGTATGGAACGTTA 108216673 Query 2792 TAGCTATCGCCAATGTTCGCAGCAATCCGGGCAGTAGCGACAGCCTTCTCCTGGAATAAC 2851 | | ||| |||| || ||||||||| || || | || ||||| | |||||| Sbjct 108216674 AACCGATCCGCAATATTGGCAGCAATCTTTGCCGTTTCAACCGCCTTTTTCTGGAAGTCT 108216733 Query 2852 GGATCGCGTTCACGCTTGCTTGCAAAATG 2880 ||||| ||||||||||| |||||| || Sbjct 108216734 GGATCACGTTCACGCTTTGCTGCAAAGTG 108216762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161627240121264