Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_019915.1 Length=40917 Score E Sequences producing significant alignments: (Bits) Value seq1219 95.1 3e-15 >seq1219 Length=45996 Score = 95.1 bits (104), Expect = 3e-15 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 984 TACCCATCATTACTCGTTCTCTAATCGTTTCACGTTCCCACTCTGCCATAGCACCAACCA 1043 ||||||| | || ||||| | | |||| | |||||| | ||||| || |||||| Sbjct 45668 TACCCATAGTAACACGTTCGCCTAGATTTTCTCTTTCCCATTGTGCCAAGGCGGCAACCA 45609 Query 1044 ATGTAACAAAAAGTCTACCCATAGCTGTAGAAGTGTCGTAAACCTCTGTAGCACTTCTGA 1103 |||| |||||| | |||||||||||||| ||||| ||||| |||||||||| ||| | Sbjct 45608 GAGTAATAAAAAGCCGACCCATAGCTGTAGTTGTGTCATAAACTTCTGTAGCAC-TCTTA 45550 Query 1104 AAGCAAC-ATTGTTCTGTTCAAATATCTC 1131 || || ||| || || |||||||| || Sbjct 45549 AATTTACAATTATTTTGCTCAAATATGTC 45521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130798589478504