Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05]
9,148 sequences; 2,189,140,010 total letters
Query= NC_019915.1
Length=40917
Score E
Sequences producing significant alignments: (Bits) Value
seq1219 95.1 3e-15
>seq1219
Length=45996
Score = 95.1 bits (104), Expect = 3e-15
Identities = 112/149 (75%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 984 TACCCATCATTACTCGTTCTCTAATCGTTTCACGTTCCCACTCTGCCATAGCACCAACCA 1043
||||||| | || ||||| | | |||| | |||||| | ||||| || ||||||
Sbjct 45668 TACCCATAGTAACACGTTCGCCTAGATTTTCTCTTTCCCATTGTGCCAAGGCGGCAACCA 45609
Query 1044 ATGTAACAAAAAGTCTACCCATAGCTGTAGAAGTGTCGTAAACCTCTGTAGCACTTCTGA 1103
|||| |||||| | |||||||||||||| ||||| ||||| |||||||||| ||| |
Sbjct 45608 GAGTAATAAAAAGCCGACCCATAGCTGTAGTTGTGTCATAAACTTCTGTAGCAC-TCTTA 45550
Query 1104 AAGCAAC-ATTGTTCTGTTCAAATATCTC 1131
|| || ||| || || |||||||| ||
Sbjct 45549 AATTTACAATTATTTTGCTCAAATATGTC 45521
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 130798589478504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |