Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq295 89.7 8e-13 seq9148 86.0 1e-11 seq191 86.0 1e-11 seq88 86.0 1e-11 seq20 86.0 1e-11 seq6 86.0 1e-11 >seq295 Length=287528 Score = 89.7 bits (98), Expect = 8e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 74988 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 75046 Query 169788 CCCCGTCAGTCCTG 169801 |||||||||||||| Sbjct 75047 CCCCGTCAGTCCTG 75060 >seq9148 Length=160301 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 31513 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 31455 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 31454 CCCCGTCAGTCC 31443 >seq191 Length=434174 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 250963 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 250905 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 250904 CCCCGTCAGTCC 250893 >seq88 Length=878102 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 504522 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 504580 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 504581 CCCCGTCAGTCC 504592 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 639002 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 638944 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 638943 CCCCGTCAGTCC 638932 >seq20 Length=65574513 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 58452237 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 58452179 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 58452178 CCCCGTCAGTCC 58452167 >seq6 Length=79162310 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 75735708 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 75735650 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 75735649 CCCCGTCAGTCC 75735638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777543077780800