Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq25 116 2e-21 seq2 111 8e-20 >seq25 Length=50193149 Score = 116 bits (128), Expect = 2e-21 Identities = 160/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 ||||||||||||| ||||| |||||||| || |||| ||||| |||||||| || || Sbjct 26656109 TACCTTTTCTTTTCCCTCCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCA 26656050 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||||| || | |||| | || || ||||| | | |||| | ||||| | || Sbjct 26656049 GCATTGGGACAATTCCATTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTC 26655990 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC-- 26241 ||||| |||| || || ||| ||||| ||||| |||| ||| | ||||| || Sbjct 26655989 GAATATTGTGAACAGAAACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCT 26655930 Query 26242 TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||| || || ||||||||| || |||||| ||||||| Sbjct 26655929 TCAAA--GTTTCATAAATTCCTTCAATACTATCATCTTTCAT 26655890 >seq2 Length=106994729 Score = 111 bits (122), Expect = 8e-20 Identities = 159/222 (72%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 ||||||||||||| ||||| |||||||| || |||| ||||| |||||||| || || Sbjct 29496046 TACCTTTTCTTTTCCCTCCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCGCA 29495987 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||||| || | |||| | || || ||||| | | |||| | ||||| | || Sbjct 29495986 GCATTGGGACAATTCCATTAGATGTACCATTTGTTCCACGAATATAACTACCTGTGGCTC 29495927 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC-- 26241 ||||| |||| || || ||| ||||| ||||| |||| ||| | ||||| || Sbjct 29495926 GAATATTGTGAACAGAAACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCT 29495867 Query 26242 TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | ||| || || | ||||||| || |||||| ||||||| Sbjct 29495866 TCAAA--GTTTCATATATTCCTTCAATACTATCATCTTTCAT 29495827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253011788254100