Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_020883.1 Length=50861 Score E Sequences producing significant alignments: (Bits) Value seq1219 96.9 1e-15 >seq1219 Length=45996 Score = 96.9 bits (106), Expect = 1e-15 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 11794 GCGGTTGCTACTTTTACAATAGCGATCAACAGAACATTCACGAATCA---AAGCGGAGAA 11850 ||||| || | |||||| | ||| | || ||| |||||| || || ||| ||| || Sbjct 33687 GCGGTAGCGAACTTTACACTTGCGGTGAATAGACCATTCAAAAA-CAGTGAAGGGGAAAA 33629 Query 11851 CGTGAAGCGGACTTTATTAATTGTGTCGCATGGAGAAAACAAGCTGAAAACGTTGCAAAC 11910 || ||||||| || || || || || | ||| | |||| ||| || ||||| || ||| Sbjct 33628 CG--AAGCGGATTTCATCAACTGCGTAGTGTGGCGCAAACCAGCAGAGAACGTAGCTAAC 33571 Query 11911 TTTCTGAAAAAAGGATCGCTCGCAGGGGTAGATGGAAAATTGCAGACGCGGAGTTATGAG 11970 || |||| |||||| || ||||| ||||||| | | | ||||| || | || || Sbjct 33570 TTCTTGAAGAAAGGAAGTCTGGCAGGTATAGATGGCAGAGTACAGACACGCAACTACGAC 33511 Query 11971 AATCAGCACGGGCAACGGGTATTTGTTACTGAAGT 12005 ||| | | || | ||||||||||| ||||| || Sbjct 33510 AATAACGAAGGCAAGCGGGTATTTGTGACTGAGGT 33476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162615932705448