Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq25 138 3e-27 seq23 138 3e-27 seq104 113 1e-19 seq1 113 1e-19 seq10 109 2e-18 seq18 104 7e-17 seq521 100 8e-16 seq19 98.7 3e-15 seq13 87.8 5e-12 >seq25 Length=50193149 Score = 138 bits (152), Expect = 3e-27 Identities = 362/543 (67%), Gaps = 16/543 (3%) Strand=Plus/Minus Query 288817 CCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAAT 288876 |||| ||||||||| | | || ||| || ||||||||||| | || || Sbjct 41159286 CCAGCAACATCAGGCCTATCAACTGTAACCTGCCGGTCAAACCTACCCGGCCGCAACAAA 41159227 Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAAT-AGATTCGGTTTG 288935 || | || | | ||| | |||||| ||||||||||| |||||| | | | || Sbjct 41159226 GCGGCATCAAGAACATCCGGTCTGTTGGTTGCTGCCAA---AACAATGACACCAGAATTC 41159170 Query 288936 CTT--AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993 | | |||||||||||| || || | ||||| | ||| || || || ||||||||| Sbjct 41159169 CCTGAAAATCCATCCATCTCAGTCAACAACTGATTGATTGTCTGCTCTCTCTCATCATTT 41159110 Query 288994 GAACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATG 289053 |||| | | ||| | | ||| | | | |||||||||||||| || |||||| Sbjct 41159109 ---CCTCCTCCAAGACCAGCTCCTCTC---TGTCTCCCAACAGCATCAATCTCATCAATG 41159056 Query 289054 AAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 || | | || |||| || | | || | | ||||| || ||||| | |||||| Sbjct 41159055 AAGACGATGCAAGGAGCCTTGGATTTGGCCTTATCGAATAAGTCCCTTACTCTGGATGCA 41158996 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATT 289172 || | ||||| ||| || ||||| |||||||| | | ||| | || | || Sbjct 41158995 CCTACTCCAACGAACAACTCCACAAACTCAGAAGCAGCG-CATGAGAAAAACGGAACCCC 41158937 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| ||||||||||| ||||||| || ||||| || || ||||| || || | || Sbjct 41158936 GGCTTCTCCTGCTACTGCTCTCGCCAATAGAGTCTTTCCAGTACCAGGAGGGCCAACCAA 41158877 Query 289233 TAGAACTCCCTTT-GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAA 289291 || ||| ||||| || | ||| || || || | || || || ||| |||| || | Sbjct 41158876 TA-AACAACCTTTCGGGATTTTAGCTCCTAAAGCTGTGTACTTGTCTGGGTTCTTCAAGA 41158818 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAG 289351 | || |||| || | ||||| ||||||||| ||| ||| ||||| || | || | Sbjct 41158817 AATCGACAACCTCTTGGAGTTCCAATTTTGCCTGGTCAGCTCCCGCTACGTCGGAGAAGG 41158758 Query 289352 TAA 289354 ||| Sbjct 41158757 TAA 41158755 >seq23 Length=61753794 Score = 138 bits (152), Expect = 3e-27 Identities = 362/543 (67%), Gaps = 16/543 (3%) Strand=Plus/Plus Query 288817 CCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAAT 288876 |||| ||||||||| | | || ||| || ||||||||||| | || || Sbjct 28934688 CCAGCAACATCAGGCCTATCAACTGTAACCTGCCGGTCAAACCTACCCGGCCGCAACAAA 28934747 Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAAT-AGATTCGGTTTG 288935 || | || | | ||| | |||||| ||||||||||| |||||| | | | || Sbjct 28934748 GCGGCATCAAGAACATCCGGTCTGTTGGTTGCTGCCAA---AACAATGACACCAGAATTC 28934804 Query 288936 CTT--AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993 | | |||||||||||| || || | ||||| | ||| || || || ||||||||| Sbjct 28934805 CCTGAAAATCCATCCATCTCAGTCAACAACTGATTGATTGTCTGCTCTCTCTCATCATTT 28934864 Query 288994 GAACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATG 289053 |||| | | ||| | | ||| | | | |||||||||||||| || |||||| Sbjct 28934865 ---CCTCCTCCAAGACCAGCTCCTCTC---TGTCTCCCAACAGCATCAATCTCATCAATG 28934918 Query 289054 AAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 || | | || |||| || | | || | | ||||| || ||||| | |||||| Sbjct 28934919 AAGACGATGCAAGGAGCCTTGGATTTGGCCTTATCGAATAAGTCCCTTACTCTGGATGCA 28934978 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATT 289172 || | ||||| ||| || ||||| |||||||| | | ||| | || | || Sbjct 28934979 CCTACTCCAACGAACAACTCCACAAACTCAGAAGCAGCG-CATGAGAAAAACGGAACCCC 28935037 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| ||||||||||| ||||||| || ||||| || || ||||| || || | || Sbjct 28935038 GGCTTCTCCTGCTACTGCTCTCGCCAATAGAGTCTTTCCAGTACCAGGAGGGCCAACCAA 28935097 Query 289233 TAGAACTCCCTTT-GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAA 289291 || ||| ||||| || | ||| || || || | || || || ||| |||| || | Sbjct 28935098 TA-AACAACCTTTCGGGATTTTAGCTCCTAAAGCTGTGTACTTGTCTGGGTTCTTCAAGA 28935156 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAG 289351 | || |||| || | ||||| ||||||||| ||| ||| ||||| || | || | Sbjct 28935157 AATCGACAACCTCTTGGAGTTCCAATTTTGCCTGGTCAGCTCCCGCTACGTCGGAGAAGG 28935216 Query 289352 TAA 289354 ||| Sbjct 28935217 TAA 28935219 >seq104 Length=774161 Score = 113 bits (124), Expect = 1e-19 Identities = 316/474 (67%), Gaps = 26/474 (5%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTG---CTTAAATCCA 288945 || || |||||||| |||||||| | ||| | ||| |||| | || || ||| Sbjct 269146 ATGTCAGCTCTGTTAGTTGCTGCAATTACGATGATAC---CGGTGTTACCCTCGAAACCA 269090 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| || |||| || ||||| ||||| || || |||||||| |||| Sbjct 269089 TCCATTTCGGTCAAAAGCTGGTTAAGAGTTTGCTCTCTCTCATCATTC---CCTC----- 269038 Query 289006 TCACCCGAATC-GCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACA 289062 |||| | | | |||| ||| | ||||| ||||||||||| || | || | | | Sbjct 269037 -CACCAATACCAGTTCCTCTTTGTCGTCCAACGGCATCAATTTCATCCACAAAGACAATA 268979 Query 289063 CACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGAC 289120 || || | ||| | | || ||| ||| | || | || || || || |||| || Sbjct 268978 CAGGGGGCATTCTCCTTGGCCTTCTTGAAAAGA--TCACGAACTCGAGAAGCACCAACAC 268921 Query 289121 CAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCG 289179 ||||| ||||||| ||||| |||||| |||| | | || | ||||| ||| ||||| Sbjct 268920 CAACAAACATTTCAACAAACTCAGAACCGGA-AATGGAGAAGAATGGCACACCAGCTTCA 268862 Query 289180 CCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACT 289239 || || | |||| | || ||||| ||||| || |||||||| || || | ||||| Sbjct 268861 CCGGCAATTGCCTTAGCAAGAAGAGTCTTTCCGGTTCCAGGAGGGCCAATGAGAAGAACA 268802 Query 289240 CCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACA 289299 || || || | ||||| | | || || | || || ||||||| || || ||| Sbjct 268801 CCTTTAGGGATACGAGCCCCGACTGCGGTAAATCTTTCTGGCTTCTTTAAGAACTCCACA 268742 Query 289300 ATTTCC-TCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | ||| | ||| || | ||||| |||||| ||| || |||||| | || || Sbjct 268741 ACCTCCATGAAG-TCCTGCTTTGCTTCATCAACTCCAGCAACATCATCGAATGT 268689 >seq1 Length=92291805 Score = 113 bits (124), Expect = 1e-19 Identities = 225/328 (69%), Gaps = 8/328 (2%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| || ||| || || ||||| ||| | | || | ||| ||||| ||||| Sbjct 23349713 ATCATATTTAACCATGATATCCTCCATTGCCTTCACAAGTCGCCTCTGTATATACCCAGT 23349654 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | ||| || || || || ||||| || ||||| | | ||| ||||| |||||||| || Sbjct 23349653 TTCAGAAGTCTTAACTGCAGTATCTATGAGACCTTCTCTACCTCCCATGGCATGGAAAAA 23349594 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTC-GG 302731 | |||| || | ||| | | | | ||| |||| || |||||||| ||| || Sbjct 23349593 GAATTCTTGTGGGGTCAACCCACGCAGATAAGAGTTCTCCACAAAACCACGACTCTCAGG 23349534 Query 302732 GCGAA--TCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CATAGCCGTATGGGA 302788 || || || || ||| ||||| || |||| || | | ||| | | || ||||||| Sbjct 23349533 GCCAAAATCATC---CTTTGTAAAATGGGGCAAAGTAC-GATCTACGAATCCATATGGGA 23349478 Query 302789 TACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAAT 302848 | |||||||| |||||||||||||| || | || | |||| || || || || | Sbjct 23349477 TTCGCTTTCCCTCAACGTTCTGCTGACCGACACAAGCTGTCATTTGGGATATGTTAATGA 23349418 Query 302849 CACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||| ||||| || || ||| | ||||| Sbjct 23349417 AACTTCCCTTTGATCCTGCAGTAACCAT 23349390 >seq10 Length=91128445 Score = 109 bits (120), Expect = 2e-18 Identities = 273/408 (67%), Gaps = 9/408 (2%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 |||||||||||| | || | ||||||||| || ||| | |||||||| ||||| Sbjct 53404604 AAATCCATCCATTTCTACTAGCAATTGATTAAGCGTACTTTCACGCTCATCATTAGAACC 53404663 Query 288999 TCTTGAATCACC-CGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 | || | || ||| | ||| | ||||| |||||||| || || || || | Sbjct 53404664 TGAGAAACCTCCACGA----CCTCTTGCTCGACCAATTGCATCAATCTCATCGATAAATA 53404719 Query 289058 TCACACACGGAGAATTTTGTCTCGC-AATTGCAAATAATTCTCTTACACGGGATGCTCCA 289116 | | || |||| | || || || ||| || ||||| || || | ||||| |||| Sbjct 53404720 TTATACTAGGAGCACACTGCCTTGCTTCTTGGAACAAATTC-CTCACCCTGGATGGTCCA 53404778 Query 289117 AGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGC 289175 | ||||||| |||| || | || |||||| | |||| |||| | ||| | |||| || Sbjct 53404779 ACACCAACAAACATCTCCATGAAATCAGAACCTGATA-TTGATAGGAAAGGTACACCTGA 53404837 Query 289176 TTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 || || || ||| | || || || ||||| || || || || || ||| | | || Sbjct 53404838 CTCACCGGCAGTTGCTTTTGCTAGGAGAGTCTTTCCCGTACCTGGAGGACCCACCAGCAG 53404897 Query 289236 AACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTC 289295 | | || ||||| | ||| || || || |||||||| ||| |||| | || | Sbjct 53404898 AGCACCTTTTGGAATTTTAGCTCCTAGGTCCTCATATTTCTTTGGGTTCTTAAGGAAGTG 53404957 Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| |||| || || | ||| |||||||| || || || ||||| Sbjct 53404958 CACAAATTCCATAATCTCTTGTTTAGCCTCATCGCAGCCAGCAACATC 53405005 Score = 104 bits (114), Expect = 7e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| || ||||| ||||| |||||| | |||| ||| | ||||| ||| | | Sbjct 84218967 ACAAACGTGGACTCTGTATGCATCACTTTGGTCAAATAATCTTTCCTTGAGGAAATGGGC 84219026 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||| |||| |||||| ||||| || ||||| || || ||||||||||||||||| || Sbjct 84219027 AGCACCATGTGCAATCATGCAATCTCGTTCCATCTCTCCAAAACGAAGACCACCATCACG 84219086 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 || | ||||| ||||| || | || ||| | | |||||| || ||| Sbjct 84219087 AGAACGTCCCTCTGCAGGTTGCCTCGTTAGAATTTGAACAGGACCCCGACCACGTGAATG 84219146 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 |||||| | ||||||||||| || || ||||| ||| ||| || | ||| || Sbjct 84219147 GATCTTATCGTCGACCATATGCTTTAGTCGTTGGTAATATGTGGGTCCCAAGAATAT 84219203 Score = 98.7 bits (108), Expect = 3e-15 Identities = 267/406 (66%), Gaps = 6/406 (1%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || || | ||||| | ||||| |||||||||||||| | Sbjct 89879527 TAAAACCATCCATTTCAGTCAACAGCTGATTCAAAGTTTGCTCCCTTTCATCATTCCCTC 89879586 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 | | |||| | | | ||| | | || |||||||||||||| || || ||||| | Sbjct 89879587 CACC--AATCCC---AGTTCCTCTCTGTCTT-CCAACAGCATCAATCTCATCGATGAACA 89879640 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 || ||| || ||||| | || | ||| | || || || | ||| ||||||| Sbjct 89879641 CCAAACATGGGGAATTAGCCTTTGCCTTGTTAAACAGGTCCCTAACTCTGGAAGCTCCAA 89879700 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTT 289177 |||||| |||| || | || || ||| | || | || ||| | || ||||| Sbjct 89879701 CGCCAACAAACATCTCGATGAACTCTGAACCAGAAAGGGAAAAGAAAGGAACCCCTGCTT 89879760 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | ||||| | ||| | ||||| | ||||||||| || || || ||||| || || | Sbjct 89879761 CCCCTGCAATGGCCTTGGCCAGCAATGTCTTACCAGTCCCTGGAGGTCCAATTAGAAGCA 89879820 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 |||| || || | | | || ||| | | |||| || ||| | ||||| || || | Sbjct 89879821 CTCCTTTGGGAATTGTGGCACCAATTGCTGCAAATTTTTCTGGGGTTTTTAAGAACTCCA 89879880 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | | || | || || | || || |||||| || |||||||| Sbjct 89879881 CTACCTCTTGAAAATCTTGCTTGGCTTCATCAATACCAGCTACATC 89879926 Score = 87.8 bits (96), Expect = 5e-12 Identities = 267/407 (66%), Gaps = 7/407 (2%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 |||||||||||| | || | || |||||||| ||||| |||||||| || Sbjct 41495146 AAATCCATCCATTTCTACTAGCAACTGGTTAAGTGTACTTTCCCGCTCATCATT---GCC 41495090 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 | ||| || | | |||| | |||| | ||||||||||| |||||||| | Sbjct 41495089 ACCAGAAAAGCCTCCACGACCCCTTGCTCTACCTATTGCATCAATTTCATCAATGAATAC 41495030 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | || |||| | || || || | |||||| ||| || | || | |||| Sbjct 41495029 AATACTAGGAGCACACTGCCTAGCCTCTTGAAATAAGCTTCTCACTCTTGACGGCCCAAC 41494970 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTT 289177 |||||| ||||||| | ||| || || | || | | || | ||| | ||| | || Sbjct 41494969 TCCAACAAACATTTCCATAAAATCTGATCCAGACA-TAGAGAGGAAAGGCACACCAGATT 41494911 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || |||| | || ||||||||||| ||||| ||||| || || | | ||| Sbjct 41494910 CACCAGCAGTTGCCTTTGCAAGAAGTGTCTTCCCTGTGCCAGGAGGACCAACAAGAAGAG 41494851 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTT-ATATTTCTCAGGGCTCTTTAAAAATTCT 289296 | ||| ||| | | || | | | ||| ||||||| ||| ||||||| || | Sbjct 41494850 C-ACCTCTGGGAATCTTAGCTCCTAATTCTTCGTATTTCTTTGGGTTCTTTAAGAAGTGC 41494792 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| ||| || ||| | |||||||| |||||||| || ||||| Sbjct 41494791 ACAAACTCCATAATTTCTTGCTTTGCCTCGTCACATCCAGCAACATC 41494745 >seq18 Length=57801308 Score = 104 bits (114), Expect = 7e-17 Identities = 272/408 (67%), Gaps = 9/408 (2%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 |||||||||||| | || | ||||||||| || ||| | |||||||| ||||| Sbjct 38731464 AAATCCATCCATTTCTACTAGCAATTGATTAAGCGTACTTTCACGCTCATCATTAGAACC 38731523 Query 288999 TCTTGAATCACC-CGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 | || | || ||| | ||| | ||||| |||||||| || || || || | Sbjct 38731524 TGAGAAACCTCCACGA----CCTCTTGCTCGACCAATTGCATCAATCTCATCGATAAATA 38731579 Query 289058 TCACACACGGAGAATTTTGTCTCGC-AATTGCAAATAATTCTCTTACACGGGATGCTCCA 289116 | | || |||| | || || || ||| || ||||| || || | ||||| |||| Sbjct 38731580 TTATACTAGGAGCACACTGCCTTGCTTCTTGGAACAAATTC-CTCACCCTGGATGGTCCA 38731638 Query 289117 AGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGC 289175 | ||||||| |||| || | || |||||| | |||| |||| | ||| | |||| || Sbjct 38731639 ACACCAACAAACATCTCCATGAAATCAGAACCTGATA-TTGATAGGAAAGGTACACCTGA 38731697 Query 289176 TTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 || || || ||| | || || || ||||| || || || || || ||| | | || Sbjct 38731698 CTCACCGGCAGTTGCTTTTGCTAGGAGAGTCTTTCCCGTACCTGGAGGACCCACCAGCAG 38731757 Query 289236 AACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTC 289295 | | || ||||| | ||| || || || |||||||| ||| |||| | || | Sbjct 38731758 AGCACCTTTTGGAATTTTAGCTCCTAGGTCCTCATATTTCTTTGGGTTCTTAAGGAAGTG 38731817 Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| |||| | || | ||| |||||||| || || || ||||| Sbjct 38731818 CACAAATTCCATGATCTCTTGTTTAGCCTCATCGCAGCCAGCAACATC 38731865 >seq521 Length=150434 Score = 100 bits (110), Expect = 8e-16 Identities = 270/407 (66%), Gaps = 7/407 (2%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 |||||||||||| | || | ||||||||||| ||||| |||||||| ||| Sbjct 43674 AAATCCATCCATTTCTACTAGCAACTGATTAAGTGTACTTTCCCGCTCATCATTGCCACC 43733 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 ||| || | | |||| | |||| | ||||||||||| |||||||| | Sbjct 43734 A---GAAAAGCCTCCACGACCCCTTGCTCTACCTATTGCATCAATTTCATCAATGAATAC 43790 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | || |||| | || || || | |||||| ||| || | || | |||| Sbjct 43791 AATACTAGGAGCACACTGCCTAGCCTCTTGAAATAAGCTTCTCACTCTTGACGGCCCAAC 43850 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTT 289177 |||||| ||||||| | ||| || || | || | | || | ||| | ||| | || Sbjct 43851 TCCAACAAACATTTCCATAAAATCGGATCCAGACA-TAGAGAGGAAAGGCACACCAGATT 43909 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || |||| |||| ||||||||||| ||||| ||||| || || | | || Sbjct 43910 CACCAGCAGTTGCCTTCGCAAGAAGTGTCTTCCCTGTGCCAGGAGGACCAACAAGAAGTG 43969 Query 289238 CTCCCTTTGGTACTTTTGCCCCAGCAGACTT-ATATTTCTCAGGGCTCTTTAAAAATTCT 289296 | || | || | || || || | ||| |||||||| ||| ||||||| || | Sbjct 43970 CACCTCTGGGAATCTTAGCTCCTA-ATTCTTCATATTTCTTTGGGTTCTTTAAGAAGTGC 44028 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| ||| || ||| | ||||||||||||||||| || ||||| Sbjct 44029 ACAAACTCCATAATTTCTTGCTTTGCCTCATCACATCCAGCAACATC 44075 >seq19 Length=70911690 Score = 98.7 bits (108), Expect = 3e-15 Identities = 333/509 (65%), Gaps = 20/509 (4%) Strand=Plus/Plus Query 288853 TCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCC 288912 ||||||||||| | | ||| || | || | | ||||| ||||| ||||||||| Sbjct 54118304 TCAAACCTACCGGGCCTCAATAAAGCCGCATCAAGAACATCGGGCCTGTTAGTTGCTGCC 54118363 Query 288913 AATACAACAATAGATTCGGTTTGCTT---AAATCCATCCATACTTGTTAAAATTTGATTA 288969 || |||| | | ||| | | |||||||||||| || | | ||||| Sbjct 54118364 AAAACAATGACAC---CGGAATTCCCCGAAAATCCATCCATCTCAGTCAGCAACTGATTG 54118420 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA 289029 | ||| || || |||||||||||| |||| | | | || | |||||| | | | Sbjct 54118421 ATTGTCTGCTCTCTTTCATCATTT---CCTCCTCCA--AGCCCA---GCTCCTCTCTGTC 54118472 Query 289030 --CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 ||||||||||| || || || ||||| | | || || | || | | || || Sbjct 54118473 TCCCAACAGCATCGATCTCATCTATGAATACAATCCAAGGCGCTTTGGATTTTGCCTTTT 54118532 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 |||| || || ||||| | ||| | || | ||||| ||| || ||||| || |||| Sbjct 54118533 CAAACAAATCCCTTACCCTGGACGTGCCTACTCCAACGAACAACTCCACAAACTCCGAAG 54118592 Query 289148 CGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | | | ||| | || | || ||||| ||||| || | ||||||| | || Sbjct 54118593 CTG-CGCATGAGAAAAAGGGCACCCCGGCTTCCCCTGCCACGGATCTCGCCAATGGAGTT 54118651 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTT-GGTACTTTTGCCCCAGCAGA 289265 || || || ||||| || || |||||| ||| ||||| || | ||| || || || Sbjct 54118652 TTTCCGGTACCAGGAGGGCCAACTAATA-AACAACCTTTCGGGATTTTAGCTCCTAAAGC 54118710 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | | || || || ||| |||| || || || |||| ||| | ||||| | ||||||| Sbjct 54118711 CGTGTACTTGTCTGGGTTCTTCAAGAAATCGACAACTTCTTGGAGTTCCAACTTTGCCTG 54118770 Query 289326 ATCACATCCTGCTACATCAGCAAAAGTAA 289354 || ||| || || |||||||| |||| Sbjct 54118771 GCCAGCTCCAGCAACGTCAGCAAAGGTAA 54118799 >seq13 Length=56485995 Score = 87.8 bits (96), Expect = 5e-12 Identities = 220/332 (66%), Gaps = 2/332 (1%) Strand=Plus/Minus Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079 |||| | |||| | |||||||| || ||||| || || | || |||| | ||| || Sbjct 54660714 CCTTGCTCTACCTATTGCATCAATCTCATCAATAAATATGATACTAGGAGCACATTGCCT 54660655 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 || | ||||| ||| || | || | |||| |||||| |||||| | ||| Sbjct 54660654 TGCCTCTTGGAATAAGCTTCTCACTCTTGACGGCCCAACTCCAACAAACATTTTCATAAA 54660595 Query 289140 TTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCA 289198 || || | || | |||| | ||| | ||| | ||| || || |||| | || | Sbjct 54660594 ATCTGATCCAGACA-TTGAGAGGAAAGGCACACCGGATTCACCAGCAGTTGCCTTAGCAA 54660536 Query 289199 GAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCC 289258 |||||||||| ||||| |||| | || | || | | || || || | || || | Sbjct 54660535 GAAGTGTCTTCCCTGTGCCAGAAAGACCAACAAAAAATGCACCTTTGGGAATCTTAGCTC 54660476 Query 289259 CAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATT 289318 | || |||||||| |||| ||||||| || | |||| ||| || ||| | | Sbjct 54660475 CTAATTCCTCATATTTCTTAGGGTTCTTTAAGAAATGCACAAACTCCATAATTTCTTGCT 54660416 Query 289319 TTGCCTCATCACATCCTGCTACATCAGCAAAA 289350 ||||||||||||| || || |||||| |||| Sbjct 54660415 TTGCCTCATCACAGCCAGCAACATCATTAAAA 54660384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471645090098876