Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_021326.1 Length=45242 Score E Sequences producing significant alignments: (Bits) Value seq1219 306 1e-78 seq4166 255 2e-63 >seq1219 Length=45996 Score = 306 bits (338), Expect = 1e-78 Identities = 599/873 (69%), Gaps = 18/873 (2%) Strand=Plus/Plus Query 27338 ATGTTCAGGTCTAGCTGTATCACAATAAAAAAGAATATCGCC--ATGCCTTTTTATAACT 27395 ||| || ||||| |||||||| || ||||| |||| ||| || | ||| | || Sbjct 26845 ATGCTCTGGTCTCGCTGTATCGCAGTAAAAGTTGATATTGCCGTATTTCAGTTTG-ATCT 26903 Query 27396 CCTTTAGCAATAGCTACCCAGTCATCTATTTCTTTGTGTCTGTGT-GCGTGTTCTTCAAT 27454 | ||| || | ||||||| ||| ||||| | ||| |||| |||||||| ||||| Sbjct 26904 C-TTTCGCTTTCTTCACCCAGTAATCAATTTCCTCATGT-TGTGCAGCGTGTTCCTCAAT 26961 Query 27455 AACGTA--CTTGTTTCCGTCGAAGTCTTCCGCTACAACCATAATAGAACCATAATGCTCA 27512 | || | | | || | | |||| || || | ||| || |||| ||||| Sbjct 26962 GAGATAAACGCGCTCTCGATCATCTATTCCCATA--ACGACAATCGACCCATGGTGCTCG 27019 Query 27513 TATCCCCAGTCGACGCCTGCATAtttcctttttatttgtttagttttaaattcttcttct 27572 || |||||||| || || ||| | | | | | || | ||| ||| ||||| || Sbjct 27020 TAACCCCAGTCAACACCAGCAAAATACTTAGTAATGCGGACTTTTTGAAAGGCTTCTACT 27079 Query 27573 ttgatgtaatgaactttttctt--tgaaatctttATATACAACACCTTCAGCAGAAACCC 27630 ||| || || ||||| ||| |||| || ||||| | |||||| || || | |||| Sbjct 27080 GAGATATAGTG--CTTTTCCTTGTTGAAGTCCTTATAAATAACACCCTCTGCCGCCACCC 27137 Query 27631 ACTTACCATAAATATCACGATCTGTGAACATTCCTGTTGGTGTACTTGCGATAATCGATT 27690 | | ||||| ||||| ||||| |||||||| || | || || |||| ||| || | Sbjct 27138 AATGACCATGGATATCTCGATCCGTGAACATGCCGGAAGGCGTGGAGGCGACAATTGACT 27197 Query 27691 CAATATATTCTTCATCTAAAAATGTATTGTCAAACAAAGTAAATTGGAATGCTTTGATAT 27750 | | ||| || ||| | |||| | |||||| | | | || ||||||||||| |||| Sbjct 27198 CCACATACTCGGGATCAAGAAATATGTTGTCATAGAGCGAGAAGTGGAATGCTTTTATAT 27257 Query 27751 TTAGTCTTCCATTCGATAACCGTTGACCACTCTTATCAATGTAATCCTTTTTAACCGGAT 27810 | || | || || || | ||| || ||||||||||||||| ||||||| || Sbjct 27258 TAAGGCGACCCGTCTGTAGCATTTGCCCGTCTTTATCAATGTAATCCGTTTTAACGCTAT 27317 Query 27811 GCATTGGGTTTTCGGGGTTGGTATCAATTAGTATCCTCGCGCCTTTGTAACTACAACGCG 27870 | || || || ||||| ||||| || | || | || |||||||| |||||||| Sbjct 27318 GAGCAGGATTCTCCGGGTTTGTATCTATCAAAATACGCGATCCTTTGTATGAACAACGCG 27377 Query 27871 AGAATACTTCTTTAATAAACATATTGTGTAATGCTGTTCCCTCGTTTAAAAAAGCACCTG 27930 ||| || ||||| | ||| ||| || || || || ||||||||||| | || || | Sbjct 27378 AGATAACCTCTTTCACAAAGGTATCATGCAACGCGGTACCCTCGTTTAATAGCGCGCCAG 27437 Query 27931 CTGAAGTAAAACCACGCGCTTTTTTCCATGCATCCGAGTTTTGACCGTCGAATACATACA 27990 | || ||||||||||||||||||||||| |||| ||| || || || ||||| | Sbjct 27438 CAGAGGTAAAACCACGCGCTTTTTTCCAACTGTCCGCGTTCGCGCCATCAAACACATAAA 27497 Query 27991 CTTTATTACCAAATATTTTGACTGCGTTAGATTTATCAAGTGTTAACTCTCTACCTAGTA 28050 |||| || || ||||| | | |||||| | ||||||||| | | |||| |||| | | Sbjct 27498 CTTTGTTGCCGAATATCTCAATTGCGTTCGTTTTATCAAGCTTGAGCTCTTTACCAATGA 27557 Query 28051 TTAACTCCATATCATCTAGTATGTTACGTCTTATAGATGCTTGTGTTGCTCCTCCAATAA 28110 | ||||| ||||| ||||||||||| | |||||| || || || || |||||||||| Sbjct 27558 TGGTTTCCATGTCATCCAGTATGTTACGGCGTATAGACGCGTGAGTAGCGCCTCCAATAA 27617 Query 28111 TGAAGTTAAGCCCCTTGTCTTTATAAGTAGC--TATGTGCATTaaaaaaaGCAGGATAAA 28168 ||||| || |||| | | ||| ||| ||||| || | || | || ||| Sbjct 27618 TGAAGGAGAGTCCCTCTCCGTAATACTGAGCGATATGTCCA--AGGAACAACAAAATAGC 27675 Query 28169 TACATACGTTTTACCTGCCCTCTTCGCACCACT 28201 ||||| ||| || ||||| | || || ||||| Sbjct 27676 TACATGCGTCTTTCCTGCACGTTTAGCGCCACT 27708 >seq4166 Length=5795 Score = 255 bits (282), Expect = 2e-63 Identities = 571/852 (67%), Gaps = 8/852 (1%) Strand=Plus/Minus Query 27268 CTTCAATGCCAGCAATAACAGCTTTGTCAGCATATCTTGCTTTTATCTTCTCTCTTCTAA 27327 ||||||| |||| | ||| || || || || | |||| ||| ||| |||| | Sbjct 1578 CTTCAATACCAGATACAACCGCCTTATCTGCGTTAATTGCACGTATTCGCTCCCTTCGGA 1519 Query 27328 ATCGTTCAATATGTTCAGGTCTAGCTGTATCACAATAAAAAAGAATATCGCCATGCCTTT 27387 | | | | ||| |||||||| ||||| || || ||||| |||| || | | Sbjct 1518 ACCTTATTACATGCTCAGGTCTTGCTGTGTCGCAGTAAAAGTTGATATTACCGTATTTCA 1459 Query 27388 TTATAACTCCTTTAGCAATAGCTACCCAGTCATCTATTTCTTTGTGTCTGTGT-GCGTGT 27446 | ||| | |||| || | ||||| | ||| ||||| | || |||||| |||||| Sbjct 1458 GTTTAATTTCTTTCGCTTTCTTCACCCAATAATCGATTTCCTCATG-CTGTGTAGCGTGT 1400 Query 27447 TCTTCAATAACGTA--CTTGTTTCCGTCGAAGTCTTCCGCT-ACAACCATAATAGAACCA 27503 || || || | || || | | ||| | | || | ||||| || || ||| Sbjct 1399 TCCTCGATGAGATATACTCGCTCCCGATCATCAATACCCATGACAACGATG---GATCCA 1343 Query 27504 TAATGCTCATATCCCCAGTCGACGCCTGCATAtttcctttttatttgtttagttttaaat 27563 | |||||||| |||||||| || || || | | | | || | ||| ||| Sbjct 1342 TGGTGCTCATAGCCCCAGTCAACACCAGCGAAGTATTTGGTGATGCGCGCTTTTTCAAAG 1283 Query 27564 tcttcttctttgatgtaatgaactttttctttgaaatctttATATACAACACCTTCAGCA 27623 ||||| || ||| || || | || ||||| || || |||| |||||| |||||| Sbjct 1282 GCTTCTGCTGAGATATAGTGCTTGTCTTTGTTGAAGTCCTTGTATATAACACCCTCAGCA 1223 Query 27624 GAAACCCACTTACCATAAATATCACGATCTGTGAACATTCCTGTTGGTGTACTTGCGATA 27683 | ||||| | ||||| |||||| |||||||||||||| || | || || |||| | Sbjct 1222 GCCACCCAATGACCATGAATATCCCGATCTGTGAACATGCCGGAAGGCGTGGAAGCGACA 1163 Query 27684 ATCGATTCAATATATTCTTCATCTAAAAATGTATTGTCAAACAAAGTAAATTGGAATGCT 27743 || || || | ||| || ||| | ||| ||||||| | | | ||| || || ||| Sbjct 1162 ATTGACTCCACATACTCAGGATCAAGAAAGATATTGTCGTAGAGCGAAAAGTGAAACGCT 1103 Query 27744 TTGATATTTAGTCTTCCATTCGATAACCGTTGACCACTCTTATCAATGTAATCCTTTTTA 27803 |||||||| || | || || || | ||| || ||||| || |||||| |||| Sbjct 1102 TTGATATTGAGGCGACCCGTCTGTAGCATTTGCCCGTCTTTATCGATATAATCCGTTTTT 1043 Query 27804 ACCGGATGCATTGGGTTTTCGGGGTTGGTATCAATTAGTATCCTCGCGCCTTTGTAACTA 27863 || || || || || ||||| |||||||||| || | || |||||| ||| | Sbjct 1042 ACGCTGTGAGCAGGATTCTCCGGGTTTGTATCAATTAAGATACGCGAGCCTTTATAAGAA 983 Query 27864 CAACGCGAGAATACTTCTTTAATAAACATATTGTGTAATGCTGTTCCCTCGTTTAAAAAA 27923 |||||||||| || ||||| | || | | || || || || || |||||||| | Sbjct 982 CAACGCGAGATAACCTCTTTCACGAAAGTGTCATGCAACGCGGTACCTTCGTTTAACAGT 923 Query 27924 GCACCTGCTGAAGTAAAACCACGCGCTTTTTTCCATGCATCCGAGTTTTGACCGTCGAAT 27983 || || || || ||||||||||||||||| ||||| ||||| ||| || || || Sbjct 922 GCCCCAGCAGAGGTAAAACCACGCGCTTTCTTCCAACTATCCGCATTTGCGCCATCAAAC 863 Query 27984 ACATACACTTTATTACCAAATATTTTGACTGCGTTAGATTTATCAAGTGTTAACTCTCTA 28043 ||||| ||||| ||||| ||||| | | ||||| | ||||||||| | | |||| | Sbjct 862 ACATATACTTTGTTACCGAATATCTCAATCGCGTTCGTTTTATCAAGCTTCAGCTCTTTG 803 Query 28044 CCTAGTATTAACTCCATATCATCTAGTATGTTACGTCTTATAGATGCTTGTGTTGCTCCT 28103 | | || ||||| || || | ||||||||| | ||| || || || || || ||| Sbjct 802 TCGATGATCGTTTCCATGTCGTCCAATATGTTACGGCGTATCGACGCGTGAGTAGCGCCT 743 Query 28104 CCAATAATGAAG 28115 || ||||||||| Sbjct 742 CCGATAATGAAG 731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144637086004704