Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_021331.1 Length=51821 Score E Sequences producing significant alignments: (Bits) Value seq5259 239 1e-58 seq9 89.7 2e-13 >seq5259 Length=4105 Score = 239 bits (264), Expect = 1e-58 Identities = 318/437 (73%), Gaps = 6/437 (1%) Strand=Plus/Minus Query 50896 TTGTTATTTATTGAGCAGTGCAGCAACAGCCGCCTTTAATTCGTCTATCTCCTTTTGCTG 50955 || ||| ||||| | ||||| |||| | | |||||||| || || || |||| | Sbjct 3442 TTATTACTTATTTAATAGTGCTTTTACAGTCTCTTTTAATTCCTCAATTTCTTTTTTCAT 3383 Query 50956 GTTTTCGATCATTCCT--CCCATGTAAACCATAGCGCAAGCCATATCAGCCATGATCACG 51013 |||||| || ||| | ||||| ||||||||||||||||||||||| | | || ||| Sbjct 3382 GTTTTCCAT--TTCATTACCCATATAAACCATAGCGCAAGCCATATCGGTTAGCATAACG 3325 Query 51014 TTGTTGTCAAGAGCAAGCGTATCATCTGCTTTGTCAACCACAATTTGACGATCTACATAT 51073 || ||||| || | |||||||| | ||||| |||| || ||||| | ||| Sbjct 3324 TTTGAATCAAGCGCCAATGTATCATCCTTTCTGTCAGTTTCAATCTGGCGATCAATGTAT 3265 Query 51074 TCTTCACCTTCATCATTAACGCCTATAACATCTGCAAAAATGTCCCCGCCAGGTATTAGC 51133 || ||||| | |||| ||| || || ||||| |||| | ||| || | || Sbjct 3264 TCCTCACCATTTTCATCAACCCCGATCACATCCTCAAATACTGGTGAGCCTGGGACGAGT 3205 Query 51134 TTTACATATTCAGGATCTATTTTTAGCAGATCCTGAGCTATCATCCCAAATCGCTGAATG 51193 || ||||||| |||||| ||||||| ||| || |||||||| | ||||| |||||||| Sbjct 3204 TTCACATATTGAGGATCGATTTTTAACAGGTCTTGAGCTATAAGGCCAAAACGCTGAATA 3145 Query 51194 TTGCTTCCATTGTATTTAAACATTGTCGGAAGCCACTGCATAACGCGATCATAGCTTTCC 51253 | |||||||||||||||||| || || | ||| ||||||||||||||||||||||| Sbjct 3144 TCAGATCCATTGTATTTAAACATGGTTGGCAACCATTGCATAACGCGATCATAGCTTTCT 3085 Query 51254 TTTCCATCTGTATAAATTATATCGTGCTTCAAATCTCTGTCAGAGTTAGCGGCCTTTTGA 51313 ||||| || || || ||||||||||| ||||| | ||||| | | || ||||| Sbjct 3084 TTTCCGTCCGTGTACTGAATATCGTGCTTTAAATCACGATCAGATGTTG-GGTTTTTTGC 3026 Query 51314 AAAATGA-AATTTCCAC 51329 ||| | | | ||||||| Sbjct 3025 AAAGTCATAGTTTCCAC 3009 Score = 179 bits (198), Expect = 1e-40 Identities = 244/333 (73%), Gaps = 18/333 (5%) Strand=Plus/Minus Query 844 AGATCTTGCAGCTGTTTTAGGTCAAAGTTTTTGAAAAATTCAATAGCTTCCTCGATCTGA 903 ||||| || | |||||| |||| |||||||||||| |||||||| |||||||| || | Sbjct 1711 AGATCCTGTAACTGTTTAAGGTAAAAGTTTTTGAAGAATTCAATTGCTTCCTCAATTCCA 1652 Query 904 GTTTCTTTGCTTTGATAGTAACGCAGCGTTTCCGCAACATCTTGCGCTAGTCCGTCAACA 963 | |||||||||||| ||||||||||| |||||||| ||||||||||| | ||| || ||| Sbjct 1651 GGTTCTTTGCTTTGGTAGTAACGCAGAGTTTCCGCTACATCTTGCGCCATTCCATCGACA 1592 Query 964 GTGATTGAGTCATGCAGCA-----AAATAATGTA-GTTGCTTCGCCCAATTTCAGCGCCG 1017 || | ||||||| || || | ||||| || ||| || | | | ||||| Sbjct 1591 GTTAGCGAGTCATTCAACAGGATCACATAATTTACGTT--TT----CTACTGGCTCGCCG 1538 Query 1018 CCAGTTGTGATGGCGCGTATTTGTGTATCGCTGATAACTTCACTGATCACAGCCGCTTGG 1077 |||| ||| || |||| ||||||||| | || || ||||| || ||| || Sbjct 1537 TCAGTCTGGATCGCTTTCATTTCTGTATCGCTTACAATATCGCTGATAACCGCCAGTTTT 1478 Query 1078 AATG--GTGCATCAATGAAAAAGATTGTTGCACCAGGGCGAATGAGCGTTAGTTGCTCTC 1135 || | ||| | || || | ||||||||| |||| |||||| || | || |||| | Sbjct 1477 AAAGGAGTGGTTAAA--AATACGATTGTTGCGCCAGTGCGAATAAGAGAAAGCGGCTCAC 1420 Query 1136 GCCATTTTGTGTC-GTATCCAGTGATATAACCT 1167 ||||||||||| | ||| ||||||||| |||| Sbjct 1419 GCCATTTTGTGCCAGTA-CCAGTGATAACACCT 1388 Score = 170 bits (188), Expect = 6e-38 Identities = 267/380 (70%), Gaps = 4/380 (1%) Strand=Plus/Minus Query 1326 TTTGTAAACCTTTCTCTCTATCCCTTGCCTGTAATTATCATGAATCGGCATCATAATTTC 1385 |||||||| | | |||||||| || | || | ||| | | || || | ||| | || Sbjct 1080 TTTGTAAAGCCTCCTCTCTATTCCATTTTTGAATTTACCGTTAACTGGTAACATTACGTC 1021 Query 1386 AAGTCCTCTTTCCTCGGCAGCAATGATCGCGTCACGGTCTGTACTCTTACAGACAACTCG 1445 | | ||| || ||||||||||| | | || || || || | || ||||| || Sbjct 1020 TAATTCTCGATCATCGGCAGCAATCAAAGTATCGCGATCATTAGCATGGCACACAACGCG 961 Query 1446 CATTCTTCTGTTGCCTTTATACCTGTAAGCTACAATCTCAATATTCGTTGCATCAAAGCA 1505 |||| | | | ||||| || ||||| | ||||| |||| ||| | | || || Sbjct 960 CATTTTACGATCTCCTTTGTATCTGTATGAAACAATTTCAAGATTTGAAGGTGAGAAACA 901 Query 1506 GGCCCAAACCTCTTGACCAGTTGCAAGGTGAATATGTTGCGCATCAATCCAGTCAACGCA 1565 ||||| || |||||||| || || ||||| |||||||||||||||||||| |||||||| Sbjct 900 CGCCCATACTTCTTGACCCGTCGCCAGGTGTATATGTTGCGCATCAATCCAATCAACGCA 841 Query 1566 AAGATAGATAGTCTTATCGGTGCTTCCTGTTCTAACAACCGACCCCCGCGTGTAGTCCTT 1625 ||| || || || || || || | || ||| |||| || |||||||| || | Sbjct 840 AAGGTAAATTGTTTTGTCAGTCTTGCCAGTTACCGCAACGCTTCCGCGCGTGTAATC--T 783 Query 1626 TGCGAGAAAAGACTG--TTTACCTTCTTCATCAATGAAAAGCACATTGCACATTTCATCA 1683 | || | ||| |||| ||||||||| |||| | |||||| | ||||||||| |||||| Sbjct 782 TTCGCGTAAAAACTGCTTTTACCTTCCTCATTGACGAAAAGAATATTGCACATATCATCA 723 Query 1684 TCAACATCATCTGAATGCAC 1703 || | ||||| |||||| Sbjct 722 TCCAATTCATCACTATGCAC 703 Score = 138 bits (152), Expect = 4e-28 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 602 CATCACGCGCCAATACAGCCTGATCGCGAGCGCCAAAAGCCTCTTGTTTAATGGCTTCCG 661 |||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 2054 CATCACGCGCCAATTCAGCCTGATCGCGAGCGCTAAAAACCTCTTGTTTAATGGCTTCCG 1995 Query 662 TTTCGATTATAGCTGAATCTTTAATCTGTTGCGTTTGCGCCTTGATTGCGTCAGTGTCT 720 |||| ||| |||||||||||||| | ||||||||| || |||||| |||||| Sbjct 1994 TTTCTGTTACTGCTGAATCTTTAATATTTTGCGTTTGGTTTTTAATTGCGCTCGTGTCT 1936 Score = 102 bits (112), Expect = 3e-17 Identities = 269/408 (66%), Gaps = 16/408 (4%) Strand=Plus/Minus Query 48346 AGCAAGTAAAATCACAAAGTATCACTGATTTTGAATAATTGACATGGGGCGCTTGCGCCC 48405 || ||||||||||||| ||||||||| |||||||||| | || || || | || Sbjct 3972 AGGAAGTAAAATCACAGCCTATCACTGACTTTGAATAATA-ATTTGCGGGGCGTAATGCC 3914 Query 48406 CTTTCTTAC-AGGAGTATAAAACATGCATATTATTACTGGTGAGATCCGAAAAGAGCCGC 48464 || | || | ||| ||||| |||| |||||||| || || |||||||| Sbjct 3913 -------ACGATAAGGAAAAATAATGCACGTTATCACTGGTGAAATTCGCAAAGAGCCTT 3861 Query 48465 GAGTAAAGCAAATGCCTAACGGCAGCACACTTTATG--TGGTTGAACTTTCAGAGCGATA 48522 || |||||| | ||||| | |||||| | |||||| | | || || Sbjct 3860 ATGTTAAGCAAGGCGCAAACGGAA-----CTTTATACATCGTTGAATTAGCGGAATCGTA 3806 Query 48523 CAAAGATAAAGATGGAAACTGGCAATATACAAACTACAGTTTCTTTTTTAATGCTAAAAC 48582 |||||| || || || | ||||| || || |||| || || |||||||| |||| Sbjct 3805 TAAAGATCGCGAAGGTAATCGACAATACACCAATTACAAGTTTTTCTTTAATGCCAAAAG 3746 Query 48583 AGAAGGACTTAAGGGTTGGTATGATGAGGCGTTCCAGGTTGGCAAGGTTATTTCTGTATC 48642 || ||| | || |||||| || ||||||||||| || || ||| || || || Sbjct 3745 CGACGGAATGAATAAATGGTATCTCGATGCGTTCCAGGTCGGTAAAGTTGTTCTAGTGTC 3686 Query 48643 TTGCGACACGCTGCGCATTGAAACGCGTGAATATAACGGAAAGATGTATTCAAGTTTAAT 48702 |||||| | | |||||||| | ||| || |||||| | || ||| | ||| Sbjct 3685 TTGCGATCAGTTACGCATTGATAGCAATGAGTACAACGGACAAATTTATAACACGCTAAC 3626 Query 48703 GCCAGGAGGATTTGCAAATCTTATCTTCAGTCAGCGCGGGGAAAGTCA 48750 | |||||||| || || || || |||||||||||| |||| Sbjct 3625 AAGTGCTGGATTTGCTAACCTGCAATTTAGCCAGCGCGGGGAAGGTCA 3578 Score = 84.2 bits (92), Expect = 7e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 531 AAGATCTTTAAGATTCTGATCCTTATGCAATAGATTTTCAGGATTTACCTGTTGCGCCCA 590 || ||| ||||| || ||||| |||| || || |||||||| || | |||||||||||| Sbjct 2188 AACATCATTAAGGTTTTGATCTTTATTCAGTAAGTTTTCAGGGTTAATCTGTTGCGCCCA 2129 Query 591 CTGGCGAGCTTCATCACGCGC 611 ||| |||||||||||||||| Sbjct 2128 TTGGTGAGCTTCATCACGCGC 2108 >seq9 Length=117247901 Score = 89.7 bits (98), Expect = 2e-13 Identities = 145/202 (72%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 13159 AATATCAGGGAAGTCGGGATGCTTATCATCTTCCGGCAGATAG-CAGCATAAT-CGCACG 13216 ||| ||||| |||| ||||| |||||||||||||||| | || | || ||| |||| | Sbjct 108216538 AATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGACCGCCAAATGCGCAAG 108216596 Query 13217 GATGGAACGTATAATCAGGCTTACGCCATAACGTTGACAGCTTGCCTACAGGATTTTCGA 13276 |||| || || ||||||| | | ||| | || ||||| || |||||||| |||| Sbjct 108216597 GATGAAAGATAAAATCAGGTTGCCTCCACATCGACGACAGGACGCTAACAGGATTCTCGA 108216656 Query 13277 TCATGTAAGGAACGCCGAAATAATCAGCGATATGCGCCGCGAT-TCTGCAAGTGTCGGCG 13335 ||||||| |||||| || ||| || |||| || || || | ||| || || | Sbjct 108216657 TCATGTATGGAACGTTAAACCGATCCGCAATATTGGCAGCAATCTTTGC-CGTTTCAACC 108216715 Query 13336 GCCTCATCCTGGAACGCTGGAT 13357 |||| | |||||| |||||| Sbjct 108216716 GCCTTTTTCTGGAAGTCTGGAT 108216737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 165687598986408