Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq228 178 2e-38 seq22 163 3e-34 seq16 138 1e-26 seq19 132 6e-25 >seq228 Length=356584 Score = 178 bits (196), Expect = 2e-38 Identities = 218/296 (74%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| |||||||||||||| ||||| || ||||| || | | ||||||| | |||| Sbjct 283344 GAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCACGCGCCTCTGCGATTTGG 283403 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||||| | |||| || || ||| |||||||| ||| |||||||| Sbjct 283404 ACCTCTTTCATGAAGAGAACGGCGAGATTTTCGAGGACGATGCCATCGGATGCGGCGAAG 283463 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCA--GTGGA 869810 || || || || || |||| |||||||| |||||| || | || ||| ||||| Sbjct 283464 AAGGCAAGAACATGACTGATGAAGTGGCGTTCGTCGGCGGTAAGATTTTGCCAGTGTGGA 283523 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | |||| ||| || || |||||||| ||||| | ||||| ||||| || |||| Sbjct 283524 AG--ATCGGAATCGAGATCAACTTCCTCGGCAGTCCAAAAAGAGGCTTCGGCTTTCTTGT 283581 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926 |||| ||||||| || |||| |||| ||||| | | ||||||| |||||| Sbjct 283582 ACATTTCCCATATCTGTGGGTATTGGATTGGGAACATGCAGAAGCGGTCCGGGTTG 283637 Score = 134 bits (148), Expect = 2e-25 Identities = 189/266 (71%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 |||||| || ||| ||||| ||||| || | | || ||||| | |||||||| Sbjct 282350 ACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCCAGGCATTAACCCGCGCTT 282409 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || | |||||| || |||||||||||||| |||||||| ||||| || ||| || || Sbjct 282410 TTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAAAATATGCCTTCTACGCAAGCGAA 282469 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 |||| | ||| |||||||| | ||| |||| || |||||| || | ||||| Sbjct 282470 AGCGATTAACCGTTCGGCAAAAGCTTCGCGGCC------GTCGATCCATTTGAAAGCCCA 282523 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 ||||| ||||| ||| |||||||||| || | ||| | |||||| ||| ||||| Sbjct 282524 ATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCGGTTTTTTTC 282583 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGA 869444 || | || |||| | | || |||| Sbjct 282584 GGTGGAATCTTTGATAGAAGTTTCGA 282609 Score = 104 bits (114), Expect = 3e-16 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| |||||||||||||| ||||| || ||||| || | | ||||||| | |||| Sbjct 283069 GAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCACGCGCCTCTGCGATTTGG 283128 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||||| | |||| || || ||| |||||||| ||| |||||||| Sbjct 283129 ACCTCTTTCATGAAGAGAACGGCGAGATTTTCGAGGACGATGCCATCGGATGCGGCGAAG 283188 Query 869753 AA 869754 || Sbjct 283189 AA 283190 >seq22 Length=61129363 Score = 163 bits (180), Expect = 3e-34 Identities = 227/313 (73%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| || ||||| ||||| ||||| || ||||| || | | |||| | | ||| Sbjct 6287879 GAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAAAGCACGCGCCTCGGAGATCTGG 6287938 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| ||||||||||| | || |||||||| || ||||| ||| |||||||||| Sbjct 6287939 ACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCATCGGAGGCGGCGAAA 6287998 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| | || ||||| |||| ||| || |||| | |||||| |||| Sbjct 6287999 AAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGAGTTTCCCAGT-GACG 6288057 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | || | || || || ||||| |||||||| | ||| || ||||| || ||||| Sbjct 6288058 AAGATCTGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGCTTCGGCTTTCTTGTA 6288117 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTGTCGC 869930 ||| |||||||||| |||| |||| || || | ||| || |||| ||||| || Sbjct 6288118 CATTTCCCATACTTCTGGGTATTGGATCGGAAACA-TACAGAATCGGTCTGGGTTCGCGG 6288176 Query 869931 GCAACAGGGGTTC 869943 || ||| || || Sbjct 6288177 CCAGCAGTGGCTC 6288189 Score = 132 bits (146), Expect = 6e-25 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 |||||||| | || | ||| || | |||||| ||||| |||||||| || ||||||||| Sbjct 6287639 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 6287698 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || || || ||| ||||| |||| | ||| ||||| || || || ||| | Sbjct 6287699 ATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCC------G 6287752 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| ||||| ||||| ||||| ||||| ||| |||||||||| ||||||||| Sbjct 6287753 TCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 6287812 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || || || ||| |||||| | | || || | || || |||| ||||| Sbjct 6287813 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAG 6287865 >seq16 Length=102030775 Score = 138 bits (152), Expect = 1e-26 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 |||||||| | || | ||| || | |||||| ||||| |||||||| || ||||||||| Sbjct 57862315 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 57862256 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||| ||| ||||| |||| | ||| ||||| || || || ||| | Sbjct 57862255 ATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCC------G 57862202 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| ||||| ||||| ||||| ||||| ||| |||||||||| ||||||||| Sbjct 57862201 TCGATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 57862142 Query 869399 CGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || || || ||| |||||| | | || || | || || |||| ||||| Sbjct 57862141 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAG 57862089 >seq19 Length=70911690 Score = 132 bits (146), Expect = 6e-25 Identities = 193/273 (71%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 |||||| || ||| ||||| ||||| || | | || ||||| | |||||||| Sbjct 44463857 ACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAATCCAGGCATTAACCCGCGCTT 44463798 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || | |||||| || || ||||||||||| |||||||| ||||| || ||| || || Sbjct 44463797 TTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAAAATATGCCTTCTACGCAAGCGAA 44463738 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 |||| | ||| |||||||| | ||| ||| || |||||| |||| ||||| Sbjct 44463737 AGCGATTAACCGTTCGGCAAAAGCTTCGCCGCC------GTCGATCCATTTCAAAGCCCA 44463684 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 ||||| ||||| ||| |||||||||| || | ||| | |||||| ||| ||||| Sbjct 44463683 ATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCGGTTTTTTTC 44463624 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || | || || | ||| || |||| ||||| Sbjct 44463623 GGTGGAATCTTTAATATAAGTTTCGAGGAGGAG 44463591 Score = 125 bits (138), Expect = 9e-23 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| |||||||||||||| ||||| || ||||| || | | |||| || | |||| Sbjct 44463577 GAGTGGATATTCTCGATGGCGATTTGGAATCCATAAAATGCACGCGCCTCCGCGATTTGG 44463518 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||||| || | || || || || |||||||| ||| |||||||| Sbjct 44463517 ACCTCTTTCATGAAGCGAACAGCGAGATTTTCTAGAACGATGCCATCGGATGCGGCGAAG 44463458 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCG 869791 || || ||||| || |||| |||||||| |||||| || Sbjct 44463457 AAGGCAAGGACATGACTGATGAAGTGGCGTTCGTCGGCG 44463419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106388472279916