Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq16 185 1e-40 seq22 179 6e-39 seq19 161 2e-33 seq228 111 2e-18 >seq16 Length=102030775 Score = 185 bits (204), Expect = 1e-40 Identities = 211/284 (74%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 |||||||| | || | ||| || | |||||| |||||||||||||| || ||||||||| Sbjct 57862315 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 57862256 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || ||||| ||| ||||| ||| | ||| ||||| ||||| || ||| || Sbjct 57862255 ATCCCCTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTC---- 57862200 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| ||||| |||||||| || ||||| ||| | |||||||| ||||||||| Sbjct 57862199 --GATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 57862142 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 || || || ||| ||| || | | || || | ||| || |||| ||||| ||| Sbjct 57862141 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 57862082 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAA 794663 |||| |||||||| |||||||| ||||| ||||| |||||||| Sbjct 57862081 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAA 57862038 >seq22 Length=61129363 Score = 179 bits (198), Expect = 6e-39 Identities = 210/284 (74%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 |||||||| | || | ||| || | |||||| |||||||||||||| || ||||||||| Sbjct 6287639 CCGGGCATTAACCCCCTCTTTTTTAACCAAAATATGGCACAGAAACTTCCGGAGAAAAAG 6287698 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || || || ||| ||||| ||| | ||| ||||| ||||| || ||| || Sbjct 6287699 ATCCCTTCTACGCAAGCAAAAGCGATTAACCGTTCGGCGAAAGTTTCTCCGCCGTC---- 6287754 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| ||||| |||||||| || ||||| ||| | |||||||| ||||||||| Sbjct 6287755 --GATCCATTTCATAGCCCACTCGGCTTTTTTAGCCACACACGGCACCGTCTCGATGGCG 6287812 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 || || || ||| ||| || | | || || | ||| || |||| ||||| ||| Sbjct 6287813 CGGAAAAGACGGTTCTTTTCATCGGAATCTTTTATGTAAGTCTCGAGAAGGAGACTGTAC 6287872 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAA 794663 |||| |||||||| |||||||| ||||| ||||| |||||||| Sbjct 6287873 ATCTCGGAGTGGATATTTTCGATAGCGATTTGGAAACCATAAAA 6287916 Score = 150 bits (166), Expect = 3e-30 Identities = 195/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | |||||||| |||||||| || | || ||||||||| || ||||| Sbjct 6287924 GCCTCGGAGATCTGGACCTCTTTCATGAACCGAACAGCAAGGTTCTCAAGGACTATGCCA 6287983 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||||||||||||||| ||||| | || |||||| |||| ||| || |||| Sbjct 6287984 TCGGAGGCGGCGAAAAAGGCGAGAACGTGACTAATGAAGTGATGCTCATCGGCGGTGAGA 6288043 Query 796270 GAGACCCAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | |||||| ||| | || | || ||||| ||||| ||||||||||| || || Sbjct 6288044 GTTTCCCAGT-GACGAAGATCTGAAGACAGATCGACTTCCTCTGCGGTCCAAAACGACGC 6288102 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388 ||||| || |||||||| ||||||| | |||| |||| || |||| | || || Sbjct 6288103 TTCGGCTTTCTTGTACATTTCCCATACTTCTGGGTATTGGATCGGAAACATACAGAATCG 6288162 Query 796389 ATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | |||||| || ||||| ||||| Sbjct 6288163 GTCTGGGTTCGCGGCCAGCAGTGGCTC 6288189 >seq19 Length=70911690 Score = 161 bits (178), Expect = 2e-33 Identities = 232/325 (71%), Gaps = 8/325 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 |||||| || ||| |||||| ||||| | |||| | || ||||| | ||||||| Sbjct 44463857 ACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAAT-CCAGGCATTAACCCGCGCT 44463799 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 | || | |||||| || |||||||||||||| |||||||| ||||| || ||| || | Sbjct 44463798 TTTTTAACCAAAATATCGCACAGAAACTGCCGGAGAAAAATATGCCTTCTACGCAAGCGA 44463739 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | ||| | ||| |||||||||| || ||| || |||||| |||| |||| Sbjct 44463738 AAGCGATTAACCGTTCGGCAAAAGCTTCGCCGCCGTC------GATCCATTTCAAAGCCC 44463685 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | || || ||||| ||| | |||||||| || | ||| | |||||| ||| || | Sbjct 44463684 AATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCGGTTTTTTT 44463625 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 || | || || | || || |||| |||||| || |||| |||||||| || | Sbjct 44463624 CGGTGGAATCTTTAATATAAGTTTCGAGGAGGAGACTATACATCTCAGAGTGGATATTCT 44463565 Query 794639 CGATGGCGATCTGGAAGCCATAAAA 794663 |||||||||| ||||| |||||||| Sbjct 44463564 CGATGGCGATTTGGAATCCATAAAA 44463540 >seq228 Length=356584 Score = 111 bits (122), Expect = 2e-18 Identities = 171/242 (71%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 |||||| || ||| |||||| ||||| | |||| | || ||||| | ||||||| Sbjct 282350 ACCTTCATCTCGAGAGATCAACTCGTTTGAGAAAGTTAAT-CCAGGCATTAACCCGCGCT 282408 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 | || | |||||| || || ||||||||||| |||||||| ||||| || ||| || | Sbjct 282409 TTTTTAACCAAAATATCGCGCAGAAACTGCCGGAGAAAAATATGCCTTCTACGCAAGCGA 282468 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | ||| | ||| |||||||||| || |||| || |||||| || | |||| Sbjct 282469 AAGCGATTAACCGTTCGGCAAAAGCTTCGCGGCC------GTCGATCCATTTGAAAGCCC 282522 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | || || ||||| ||| | |||||||| || | ||| | |||||| ||| || | Sbjct 282523 AATCGGCTTTTTTAGCCACGCACGGCACCGTTTCAGTAGCGTGGAAGAGGCGGTTTTTTT 282582 Query 794579 CG 794580 || Sbjct 282583 CG 282584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915273285515972