Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq9 1242 0.0 seq12 235 1e-57 seq15 194 4e-45 >seq9 Length=117247901 Score = 1242 bits (1376), Expect = 0.0 Identities = 690/691 (99%), Gaps = 0/691 (0%) Strand=Plus/Minus Query 35186 GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGC 35245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76969392 GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGC 76969333 Query 35246 TTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAA 35305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76969332 TTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAA 76969273 Query 35306 AAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCA 35365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76969272 AAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCA 76969213 Query 35366 GTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAA 35425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76969212 GTTCACTTACACCGCTTCTCAACCCGGTACGCACCAGAAAATCATTGATATGGCCATGAA 76969153 Query 35426 TGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTACG 35485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76969152 TGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTGGCCTCAACACGATTTTACG 76969093 Query 35486 TCACTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTC 35545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76969092 TCACTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCATACAGCCGGGCAGTGACGTC 76969033 Query 35546 ATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAATCGCGCCAGCGC 35605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76969032 ATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGGGGCTAAATCGCGCCAGCGC 76968973 Query 35606 TGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAA 35665 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76968972 TGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAA 76968913 Query 35666 CGCACTATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATA 35725 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76968912 CGCACTATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGACGTGGTGATA 76968853 Query 35726 TGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATC 35785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76968852 TGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATC 76968793 Query 35786 AGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTAAATCTGAGGCAGCACCTGGCA 35845 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 76968792 AGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCA 76968733 Query 35846 CGGCTGGGACGGAAGTCGCTGTCGTTCTCAA 35876 ||||||||||||||||||||||||||||||| Sbjct 76968732 CGGCTGGGACGGAAGTCGCTGTCGTTCTCAA 76968702 Score = 450 bits (498), Expect = 3e-122 Identities = 251/252 (99%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 35407 TCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTG 35466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 101240333 TCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACAGCCCGCATTATGGGCGTTG 101240392 Query 35467 GCCTCAACACGATTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCAT 35526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 101240393 GCCTCAACACGATTTTACGTCACTTAAAAAACTCAGGCCGCAGTCGGTAACCTCGCGCAT 101240452 Query 35527 ACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGG 35586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 101240453 ACAGCCGGGCAGTGACGTCATCGTCTGCGCGGAAATGGACGAACAGTGGGGCTATGTCGG 101240512 Query 35587 GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGT 35646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 101240513 GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGACAGTCTCCGGAAGACGGTTGT 101240572 Query 35647 TGCGCACGTATT 35658 |||||||| ||| Sbjct 101240573 TGCGCACGAATT 101240584 Score = 233 bits (258), Expect = 5e-57 Identities = 129/129 (100%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 35657 TTCGGTGAACGCACTATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGAC 35716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48695921 TTCGGTGAACGCACTATGGCGACGCTGGGGCGTCTTATGAGCCTGCTGTCACCCTTTGAC 48695862 Query 35717 GTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTG 35776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48695861 GTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTG 48695802 Query 35777 CACGTAATC 35785 ||||||||| Sbjct 48695801 CACGTAATC 48695793 >seq12 Length=102570143 Score = 235 bits (260), Expect = 1e-57 Identities = 130/130 (100%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 35566 CGAACAGTGGGGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGA 35625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 92580390 CGAACAGTGGGGCTATGTCGGGGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGA 92580331 Query 35626 CAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGCTGGG 35685 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 92580330 CAGTCTCCGGAAGACGGTTGTTGCGCACGTATTCGGTGAACGCACTATGGCGACGCTGGG 92580271 Query 35686 GCGTCTTATG 35695 |||||||||| Sbjct 92580270 GCGTCTTATG 92580261 >seq15 Length=91555666 Score = 194 bits (214), Expect = 4e-45 Identities = 107/107 (100%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 35391 GGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACAGCC 35450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 53552251 GGTACGCACCAGAAAATCATTGATATGGCCATGAATGGCGTTGGATGCCGGGCAACAGCC 53552192 Query 35451 CGCATTATGGGCGTTGGCCTCAACACGATTTTACGTCACTTAAAAAA 35497 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 53552191 CGCATTATGGGCGTTGGCCTCAACACGATTTTACGTCACTTAAAAAA 53552145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127090192374720