Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_022980.1 Length=45798 Score E Sequences producing significant alignments: (Bits) Value seq1219 89.7 2e-13 >seq1219 Length=45996 Score = 89.7 bits (98), Expect = 2e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 36983 CGATACAAAGTTGGCAAACATTACTTTGTACTACAAGGTGAGGAATTAAGACAGTTTAAA 37042 |||||||||||||| |||||||| |||| | || ||||| ||||| | |||||| Sbjct 39058 CGATACAAAGTTGGAAAACATTATTTTGCTTTGACTGGAGAGGATTTAAGGGATTTTAAA 38999 Query 37043 GCTTCTACG-CAAATATCGGGGAACCTCAAATTTGCTCCAATCCTATACCTTTGGACTGA 37101 | || ||| ||| | | | ||| |||| | || | || || |||||||| || Sbjct 38998 GGGTC-ACGTCAATTTGACGCTAGCCTTAAATACACATCAGTGCTTTATCTTTGGACAGA 38940 Query 37102 AAAAGGTGCGTGGCTTCAAGCGAAATCTCTTAACACAGATCAAGCGTGGGAAGCCTACGA 37161 ||||| || ||||| || || ||||| | ||||| || |||| ||||| || ||||| Sbjct 38939 GAAAGGCGCATGGCTACATGCTAAATCGTTAAACACTGACGAAGCATGGGACGCTTACGA 38880 Query 37162 AATGCTAGTAGATGATTACTA 37182 || ||||| || ||||| Sbjct 38879 GGCTCTTGTAGACGACTACTA 38859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146416092725760