Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_023500.1 Length=43301 Score E Sequences producing significant alignments: (Bits) Value seq1219 306 1e-78 seq4166 255 2e-63 >seq1219 Length=45996 Score = 306 bits (338), Expect = 1e-78 Identities = 599/873 (69%), Gaps = 18/873 (2%) Strand=Plus/Minus Query 16480 AGTGGTGCGAAGAGGGCAGGTAAAACGTATGTATTTATCCTGCtttttttAATGCACATA 16539 ||||| || || | ||||| || ||| ||||| ||| || | || | || ||||| Sbjct 27708 AGTGGCGCTAAACGTGCAGGAAAGACGCATGTAGCTATTTTGTTGTTCCT--TGGACATA 27651 Query 16540 --GCTACTTATAAAGACAAGGGGCTTAACTTCATTATTGGAGGAGCAACACAAGCATCTA 16597 ||| ||| | | |||| || ||||||||||||||| || || || || |||| Sbjct 27650 TCGCTCAGTATTACGGAGAGGGACTCTCCTTCATTATTGGAGGCGCTACTCACGCGTCTA 27591 Query 16598 TAAGACGTAACATACTAGATGATATGGAGTTAATACTAGGTAGAGAGTTAACACTTGATA 16657 || | ||||||||||| ||||| ||||| || | |||| |||| | | ||||||| Sbjct 27590 TACGCCGTAACATACTGGATGACATGGAAACCATCATTGGTAAAGAGCTCAAGCTTGATA 27531 Query 16658 AATCTAACGCAGTCAAAATATTTGGTAATAAAGTGTATGTATTCGACGGTCAAAACTCGG 16717 || | |||||| | | ||||| || || ||||| ||||| || || || ||| ||| Sbjct 27530 AAACGAACGCAATTGAGATATTCGGCAACAAAGTTTATGTGTTTGATGGCGCGAACGCGG 27471 Query 16718 ATGCATGGAAAAAAGCGCGTGGTTTTACTTCAGCAGGTGCTTTTTTAAACGAGGGAACAG 16777 | ||||||||||||||||||||||| || || || || | ||||||||||| || | Sbjct 27470 ACAGTTGGAAAAAAGCGCGTGGTTTTACCTCTGCTGGCGCGCTATTAAACGAGGGTACCG 27411 Query 16778 CATTACACAATATGTTTATTAAAGAAGTATTCTCGCGTTGTAGTTACAAAGGCGCGAGGA 16837 | || || ||| ||| | ||||| || ||||||||||| |||||||| || | | Sbjct 27410 CGTTGCATGATACCTTTGTGAAAGAGGTTATCTCGCGTTGTTCATACAAAGGATCGCGTA 27351 Query 16838 TACTAATTGATACCAACCCCGAAAACCCAATGCATCCGGTTAAAAAGGATTACATTGATA 16897 | | || ||||| ||||| || || || ||| ||||||| |||||||||||||| Sbjct 27350 TTTTGATAGATACAAACCCGGAGAATCCTGCTCATAGCGTTAAAACGGATTACATTGATA 27291 Query 16898 AGAGTGGTCAACGGTTATCGAATGGAAGACTAAATATCAAAGCATTCCAATTTACTTTGT 16957 | || ||| | || || || | || ||||| ||||||||||| || | | | Sbjct 27290 AAGACGGGCAAATGCTACAGACGGGTCGCCTTAATATAAAAGCATTCCACTTCTCGCTCT 27231 Query 16958 TTGACAATACATTTTTAGATGAAGAATATATTGAATCGATTATCGCAAGTACACCAACAG 17017 |||||| | |||| | ||| || ||| | || || ||| |||| || || | | Sbjct 27230 ATGACAACATATTTCTTGATCCCGAGTATGTGGAGTCAATTGTCGCCTCCACGCCTTCCG 27171 Query 17018 GAATGTTCACAGATCGTGATATTTATGGTAAGTGGGTTTCTGCTGAAGGTGTTGTATATa 17077 | |||||||| ||||| ||||| ||||| | ||||| | || || |||||| | |||| Sbjct 27170 GCATGTTCACGGATCGAGATATCCATGGTCATTGGGTGGCGGCAGAGGGTGTTATTTATA 27111 Query 17078 aagatttca--aagaaaaagttcattacatcaaagaagaagaatttaaaactaaacaaat 17135 | || |||| ||| ||||| || || ||| || ||||| ||| ||| | || Sbjct 27110 AGGACTTCAACAAGGAAAAG--CACTATATCTCAGTAGAAGCCTTTCAAAAAGTCCGCAT 27053 Query 17136 aaaaaggaaaTATGCAGGCGTCGACTGGGGATATGAGCATTATGGTTCTATTATGGTTGT 17195 | | | | | ||| || || |||||||| || ||||| |||| || ||| | || | Sbjct 27052 TACTAAGTATTTTGCTGGTGTTGACTGGGGTTACGAGCACCATGGGTCGATTGTCGT--T 26995 Query 17196 AGCGGAAGACTTCGACGGAAACAAG--TACGTTATTGAAGAACACGC-ACACAGACACAA 17252 | |||| | | || | | | || | ||||| |||||||| |||| ||| | Sbjct 26994 ATGGGAATAGATGATCGAGAGCGCGTTTATCTCATTGAGGAACACGCTGCACA-ACATGA 26936 Query 17253 AGAAATAGATGACTGGGTAGCTATTGCTAAAGGAGTTATAAAAAGGCAT--GGCGATATT 17310 ||||| ||| ||||||| | || ||| ||| | ||| | || ||| |||| Sbjct 26935 GGAAATTGATTACTGGGTGAAGAAAGCGAAA-GAGAT-CAAACTGAAATACGGCAATATC 26878 Query 17311 CTTTTTTATTGTGATACAGCTAGACCTGAACAT 17343 ||||| || |||||||| ||||| || ||| Sbjct 26877 AACTTTTACTGCGATACAGCGAGACCAGAGCAT 26845 >seq4166 Length=5795 Score = 255 bits (282), Expect = 2e-63 Identities = 571/852 (67%), Gaps = 8/852 (1%) Strand=Plus/Plus Query 16566 CTTCATTATTGGAGGAGCAACACAAGCATCTATAAGACGTAACATACTAGATGATATGGA 16625 ||||||||| ||||| || || || || || ||| | ||||||||| | || || ||||| Sbjct 731 CTTCATTATCGGAGGCGCTACTCACGCGTCGATACGCCGTAACATATTGGACGACATGGA 790 Query 16626 GTTAATACTAGGTAGAGAGTTAACACTTGATAAATCTAACGCAGTCAAAATATTTGGTAA 16685 || | | | |||| | | ||||||||| | ||||| | | ||||| ||||| Sbjct 791 AACGATCATCGACAAAGAGCTGAAGCTTGATAAAACGAACGCGATTGAGATATTCGGTAA 850 Query 16686 TAAAGTGTATGTATTCGACGGTCAAAACTCGGATGCATGGAAAAAAGCGCGTGGTTTTAC 16745 ||||| ||||| || || || ||| ||||| ||||| ||||||||||||||||| Sbjct 851 CAAAGTATATGTGTTTGATGGCGCAAATGCGGATAGTTGGAAGAAAGCGCGTGGTTTTAC 910 Query 16746 TTCAGCAGGTGCTTTTTTAAACGAGGGAACAGCATTACACAATATGTTTATTAAAGAAGT 16805 || || || || | |||||||| || || || || || | | || | ||||| || Sbjct 911 CTCTGCTGGGGCACTGTTAAACGAAGGTACCGCGTTGCATGACACTTTCGTGAAAGAGGT 970 Query 16806 ATTCTCGCGTTGTAGTTACAAAGGCGCGAGGATACTAATTGATACCAACCCCGAAAACCC 16865 ||||||||||| ||| |||||| || | || |||||||||| ||||| || || || Sbjct 971 TATCTCGCGTTGTTCTTATAAAGGCTCGCGTATCTTAATTGATACAAACCCGGAGAATCC 1030 Query 16866 AATGCATCCGGTTAAAAAGGATTACATTGATAAGAGTGGTCAACGGTTATCGAATGGAAG 16925 || || |||| |||||| || ||||| || ||| | || || || | Sbjct 1031 TGCTCACAGCGTAAAAACGGATTATATCGATAAAGACGGGCAAATGCTACAGACGGGTCG 1090 Query 16926 ACTAAATATCAAAGCATTCCAATTTACTTTGTTTGACAATACATTTTTAGATGAAGAATA 16985 || ||||||||||| || || ||| | | | ||||||| ||| | ||| || || Sbjct 1091 CCTCAATATCAAAGCGTTTCACTTTTCGCTCTACGACAATATCTTTCTTGATCCTGAGTA 1150 Query 16986 TATTGAATCGATTATCGCAAGTACACCAACAGGAATGTTCACAGATCGTGATATTTATGG 17045 | | || || ||| |||| || || | || |||||||||||||| |||||| |||| Sbjct 1151 TGTGGAGTCAATTGTCGCTTCCACGCCTTCCGGCATGTTCACAGATCGGGATATTCATGG 1210 Query 17046 TAAGTGGGTTTCTGCTGAAGGTGTTGTATATaaagatttcaaagaaaaagttcattacat 17105 | | ||||| ||||||| |||||| |||| || || ||||| || | || || || Sbjct 1211 TCATTGGGTGGCTGCTGAGGGTGTTATATACAAGGACTTCAACAAAGACAAGCACTATAT 1270 Query 17106 caaagaagaagaatttaaaactaaacaaataaaaaggaaaTATGCAGGCGTCGACTGGGG 17165 | || ||||| ||| ||| | || | | | | || || || |||||||| Sbjct 1271 CTCAGCAGAAGCCTTTGAAAAAGCGCGCATCACCAAATACTTCGCTGGTGTTGACTGGGG 1330 Query 17166 ATATGAGCATTATGGTTCTATTATGGTTGT-AGCGGAAGACTTCGACGGAAACAAG--TA 17222 |||||||| |||| || || ||||| | || | | ||| | | || || Sbjct 1331 CTATGAGCACCATGGATC---CATCGTTGTCATGGGTATTGATGATCGGGAGCGAGTATA 1387 Query 17223 CGTTATTGAAGAACACGC-ACACAGACACAAAGAAATAGATGACTGGGTAGCTATTGCTA 17281 | || || |||||||| |||||| || | ||||| ||| | ||||| | || | Sbjct 1388 TCTCATCGAGGAACACGCTACACAG-CATGAGGAAATCGATTATTGGGTGAAGAAAGCGA 1446 Query 17282 AAGGAGTTATAAAAAGGCATGGCGATATTCTTTTTTATTGTGATACAGCTAGACCTGAAC 17341 ||| | ||| | | | || |||| ||||| || || ||||| |||||||| | Sbjct 1447 AAGAAATTAAACTGAAATACGGTAATATCAACTTTTACTGCGACACAGCAAGACCTGAGC 1506 Query 17342 ATATTGAACGATTTAGAAGAGAGAAGATAAAAGCAAGATATGCTGACAAAGCTGTTATTG 17401 || | | | || |||| ||| ||| |||| | || || || || ||| | Sbjct 1507 ATGTAATAAGGTTCCGAAGGGAGCGAATACGTGCAATTAACGCAGATAAGGCGGTTGTAT 1566 Query 17402 CTGGCATTGAAG 17413 |||| ||||||| Sbjct 1567 CTGGTATTGAAG 1578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138426560742888