Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq9148 80.6 1e-10 seq88 80.6 1e-10 seq23 80.6 1e-10 seq20 80.6 1e-10 seq7 80.6 1e-10 seq4 80.6 1e-10 seq3 80.6 1e-10 >seq9148 Length=160301 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 38868 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 38927 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 38928 CTGCTCTATCCCGC 38941 >seq88 Length=878102 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 497167 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 497108 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 497107 CTGCTCTATCCCGC 497094 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 646357 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 646416 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 646417 CTGCTCTATCCCGC 646430 >seq23 Length=61753794 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 56573923 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 56573982 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 56573983 CTGCTCTATCCCGC 56573996 >seq20 Length=65574513 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 58459567 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 58459626 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 58459627 CTGCTCTATCCCGC 58459640 >seq7 Length=42802127 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 9419024 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 9419083 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 9419084 CTGCTCTATCCCGC 9419097 >seq4 Length=78750349 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 158432 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 158373 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 158372 CTGCTCTATCCCGC 158359 >seq3 Length=37363027 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 6248616 GTTGCGGGAACGGGATTTGAACCCATGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 6248675 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 6248676 CTGCTCTATCCCGC 6248689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181583471990376