Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq20 87.8 2e-12 seq21 84.2 3e-11 seq2 84.2 3e-11 seq1 84.2 3e-11 >seq20 Length=65574513 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| || | ||| | |||| ||||||||||||||||| |||||||||||| | ||| Sbjct 17429460 AATTTGTCTGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCAT 17429519 Query 52029 GTTCCTCAATCATATG 52044 ||||||||||||| || Sbjct 17429520 GTTCCTCAATCATTTG 17429535 >seq21 Length=47987235 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| | | ||| | |||| ||||||||||||||||| |||||||||||| | ||| Sbjct 18445195 AATTTGTCAGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCAT 18445254 Query 52029 GTTCCTCAATCATATG 52044 ||||||||||||| || Sbjct 18445255 GTTCCTCAATCATTTG 18445270 >seq2 Length=106994729 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| | | ||| | |||| ||||||||||||||||| |||||||||||| | ||| Sbjct 54350487 AATTTGTCAGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCAT 54350428 Query 52029 GTTCCTCAATCATATG 52044 ||||||||||||| || Sbjct 54350427 GTTCCTCAATCATTTG 54350412 >seq1 Length=92291805 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 51969 AATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 52028 |||||| || | ||| | |||| |||||||||||||| || |||||||||||| | ||| Sbjct 23347976 AATTTGTCTGTTACTTCACCATACAATGCTGATTTTGACGGTGATGAAATGAATATGCAT 23348035 Query 52029 GTTCCTCAATCATATG 52044 ||||||||||||| || Sbjct 23348036 GTTCCTCAATCATTTG 23348051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635104967441440