Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_024391.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq1219 104 6e-18 >seq1219 Length=45996 Score = 104 bits (114), Expect = 6e-18 Identities = 176/250 (70%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 16288 TACTTTGCTGGTGTCGACTGGGGTTACGAGCACTATGGATCTATTGTGTTAATAGGACGA 16347 || ||||||||||| |||||||||||||||||| |||| || ||||| | || ||| | Sbjct 27045 TATTTTGCTGGTGTTGACTGGGGTTACGAGCACCATGGGTCGATTGTCGTTATGGGAATA 26986 Query 16348 GGT-ATAGATGGTAACTTTTATTTTATTGAGGAGCACGCACACCAATTTAAGTTTATTGA 16406 | | || || | | ||||| | |||||||| ||||| ||| | || ||||| Sbjct 26985 GATGATCGA-GAGCGCGTTTATCTCATTGAGGAACACGCTGCACAACATGAGGAAATTGA 26927 Query 16407 TGATTGGGTGGATATTGCAAAAGATATTGTAAGTAGATATGGCAATATTAATTTTTACTG 16466 | | |||||| | | || ||||| || | | ||| |||||||| || |||||||| Sbjct 26926 TTACTGGGTGAAGAAAGCGAAAGAGATCAAACTGAAATACGGCAATATCAACTTTTACTG 26867 Query 16467 CGATACTGCACGACCTGAATATATCACTGA-ATTTAGAAGACATAGATTACGTGCAATTA 16525 |||||| || |||| || || | | ||| || |||| | | | ||||| || | Sbjct 26866 CGATACAGCGAGACCAGAGCATGT-AATGAGGTTCCGAAGGGAGCGCATTCGTGCTATCA 26808 Query 16526 ACGCTGATAA 16535 |||| ||||| Sbjct 26807 ACGCAGATAA 26798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134075033511528