Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq48 91.5 3e-13 seq23 87.8 3e-12 >seq48 Length=1435396 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/140 (74%), Gaps = 11/140 (8%) Strand=Plus/Minus Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC----- 81697 ||||||| | |||||||| ||||| || |||| |||||||| || ||| || ||| Sbjct 1250723 CAGAGTAGACTCCTTCTGGATATTGTAGTCAGCTAGAGTTCGACCGTCCTCCAACTGCTT 1250664 Query 81698 ------AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751 |||||| | || || ||| | || | ||| | ||||| || ||||||||||| Sbjct 1250663 CCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGAATCTTTGC 1250604 Query 81752 TTTTATATTTTCAATCGTAT 81771 ||||| ||| |||||||||| Sbjct 1250603 TTTTACATTGTCAATCGTAT 1250584 >seq23 Length=61753794 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/140 (73%), Gaps = 11/140 (8%) Strand=Plus/Minus Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC----- 81697 ||||||| | |||||||| ||||| || |||| ||| |||| || ||| || ||| Sbjct 11031472 CAGAGTAGACTCCTTCTGGATATTGTAGTCAGCTAGGGTTCGACCGTCCTCCAACTGCTT 11031413 Query 81698 ------AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751 |||||| | || || ||| | || | ||| | ||||| || ||||||||||| Sbjct 11031412 CCCAGCAAAGATCAACCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGAATCTTTGC 11031353 Query 81752 TTTTATATTTTCAATCGTAT 81771 ||||| ||| |||||||||| Sbjct 11031352 TTTTACATTGTCAATCGTAT 11031333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903307894929280