Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq20 96.9 8e-15 seq1 96.9 8e-15 seq143 84.2 5e-11 seq2 84.2 5e-11 >seq20 Length=65574513 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||| ||||| |||| ||||| || ||| | ||||| || |||||||||| Sbjct 17429350 GACATTTAAATGATGGAGATTATGTTCTTTTTAATCGTCAACCCAGTCTCCATAAAATGT 17429409 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAG 305424 | || |||| |||| | || | ||||| | | || ||||| ||||| | Sbjct 17429410 CAATCATGGGCCATAGAATCCGA--ATTATGCCATACTCTACGTTTCGCCTAAATTTGTC 17429467 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || | | | || || ||||| ||||||||||| |||||||||||||||||||| ||||| Sbjct 17429468 TGTTACTTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCA 17429527 Query 305485 ATCA 305488 |||| Sbjct 17429528 ATCA 17429531 >seq1 Length=92291805 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||| ||||| |||| ||||| || ||| | ||||| || |||||||||| Sbjct 23347866 GACATTTAAATGATGGAGATTATGTTCTTTTTAATCGTCAACCTAGTCTCCATAAAATGT 23347925 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAG 305424 | || |||| |||| | || | ||||| | | |||||||| ||||| | Sbjct 23347926 CAATCATGGGCCATAGAATCCGA--ATTATGCCATACTCTACATTTCGTCTAAATTTGTC 23347983 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || | | | || || ||||| |||||||| || |||||||||||||||||||| ||||| Sbjct 23347984 TGTTACTTCACCATACAATGCTGATTTTGACGGTGATGAAATGAATATGCATGTTCCTCA 23348043 Query 305485 ATCA 305488 |||| Sbjct 23348044 ATCA 23348047 >seq143 Length=592694 Score = 84.2 bits (92), Expect = 5e-11 Identities = 196/294 (67%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || || ||| |||| ||||| || | ||||| | ||| |||| | || |||||| Sbjct 232112 GACTTCATTAATAAGGAACTTATTCTGTTTTCCATGGCTGACCTTCAAAGATCAATTCCT 232053 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGA 279925 | | ||||| |||| ||| || | ||||| | ||| || |||||| || Sbjct 232052 TCCATGGTTGATGGCCTGAAGCCTGGTCAAAGGAAGATCCTTTTCTGTGCTTTCAAGAGG 231993 Query 279926 AAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGT 279985 || || ||| | || ||| |||| || | ||||||||||| || ||| | | | Sbjct 231992 AATTTTGTACATGAGGCAAAGGTTTCTCAATTTTCGGGTTATGTTTCGGAGCATTCTGCT 231933 Query 279986 TATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTA 280043 || ||||| ||||| || |||| | | || | ||||| || | ||||| |||||| Sbjct 231932 TACCATCATGGTGAGCAGAGTCTTTGTA--GTACCATTGTTGGAATGGCCCAGGATTTTG 231875 Query 280044 TGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTA 280097 ||| |||||| |||| || ||| || |||||||||||| |||||| Sbjct 231874 TGGGCAGTAACAACATAAACCTTCTTCGTCCTGGGGGTCAATTTGGTACTCGTA 231821 >seq2 Length=106994729 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 304937 CAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAA 304996 ||||| | || |||||||| || ||| | || |||| | | |||| | ||| Sbjct 54351126 CAGGCTACACAGAGATCTGGGAGGCCTATTAAATCTATTTGTAGTAGGCTTAAGGCGAAA 54351067 Query 304997 GAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTA 305056 ||||| || ||| | |||||| | ||||| ||| | ||||| ||| || ||| ||| Sbjct 54351066 GAGGGCCGGATTAGGGGTAATTTGATGGGGAAAAGGGTTGACTTTTCAGCTCGAACAGTA 54351007 Query 305057 ATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTT 305114 || ||||| ||| | | || | | || ||||| | ||||| || ||| | ||||||| Sbjct 54351006 ATTACACCAGATCCAAATATCAATATTGATGAACTTGGAGTACC--TTGGAGTATTGCTT 54350949 Query 305115 TAAAACTAACATTTCCAGA 305133 |||| || |||| |||||| Sbjct 54350948 TAAATCTTACATATCCAGA 54350930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186673695155228