Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_026010.1 Length=50109 Score E Sequences producing significant alignments: (Bits) Value seq5259 113 1e-20 seq9 84.2 7e-12 >seq5259 Length=4105 Score = 113 bits (124), Expect = 1e-20 Identities = 179/255 (70%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 9359 ACAAAATGGAAGGATCAGCTTGCTCTGATTCGAGTAGGTGCAACTATCGTATTCCTGGAA 9418 ||||||||| || | |||| |||| ||||| || ||||| |||||||| | || Sbjct 1410 ACAAAATGGCGTGAGCCGCTTTCTCTTATTCGCACTGGCGCAACAATCGTATTTTT--AA 1467 Query 9419 CAAC--CGATAAAGCTGGCTGTAATCAGCGATATCGTGAGCGACACTGAGTTAAAGGCTA 9476 | || | |||| ||||| || ||||||||||| || ||||| || || | || || | Sbjct 1468 CCACTCCTTTAAAACTGGCGGTTATCAGCGATATTGTAAGCGATACAGAAATGAAAGCGA 1527 Query 9477 TCTCTACTGATGGTCAGACTGCCGCTGACGGTAAGTATGTGATCCTGCTTAACGATTCAC 9536 || ||||| || || | | | ||| || |||||||||||| | || || || | Sbjct 1528 TCCAGACTGACGGCGAGCCAGTAGAAAACGTAAATTATGTGATCCTGTTGAATGACTCGC 1587 Query 9537 TGACTGTTAACGGATTAGCTCAAAACGTTGCTGAGACGCTTCGATACTATCAAAGCAAAG 9596 | ||||| | ||| | || ||| | || || || || || || ||||| |||||||||| Sbjct 1588 TAACTGTCGATGGAATGGCGCAAGATGTAGCGGAAACTCTGCGTTACTACCAAAGCAAAG 1647 Query 9597 AGACTGAGATTGCGG 9611 | ||| |||| || Sbjct 1648 AACCTGGAATTGAGG 1662 Score = 107 bits (118), Expect = 6e-19 Identities = 168/236 (71%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 8818 GATGAAGAGTTTTGCAATATTTTGATTATTGATGAGGAGGGTAG--GGAGTCATTTTATG 8875 ||||| || | ||||||||| | | | ||||||| |||| | ||| ||||| | Sbjct 721 GATGATGATATGTGCAATATTCTTTTCGTCAATGAGGAAGGTAAAAGCAGT--TTTTACG 778 Query 8876 CAAAGAAATACACAAGTTGCTCGGTTGCCGTGACTGGTAAAACTGAAAAAGCGATCTACT 8935 | || | ||||| | | ||||| || ||||| || ||||| ||| | || ||| Sbjct 779 CGAAAGATTACACGCGCGGAAGCGTTGCGGTAACTGGCAAGACTGACAAAACAATTTACC 838 Query 8936 TATGCCTTAATTGGATTGATGCTCAGCATATTGCATTTCAC-ACAAAGCAAGAGGTATGG 8994 | ||| || ||||||||||||| || ||||| || | | || ||||| |||||| Sbjct 839 TTTGCGTTGATTGGATTGATGCGCAACATATA-CACCTGGCGACGGGTCAAGAAGTATGG 897 Query 8995 GCCTGCTTCACTCCTGAAAATCTAGAAATGGTTGCGTACAGATACAAGGGAGATCG 9050 || || ||| | ||| |||||| ||||| ||| | ||||||||||| |||||||| Sbjct 898 GCGTGTTTCTCACCTTCAAATCTTGAAATTGTTTCATACAGATACAAAGGAGATCG 953 Score = 84.2 bits (92), Expect = 7e-12 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 8374 AAACACCAACCTTGCCCTAACTGCGGGGGTAAGGACCGCTTTCGCTGGACTGATAACCTT 8433 |||||||| ||||||||| | ||||| ||||| || ||||||||||||||||| || | Sbjct 225 AAACACCAGCCTTGCCCTTATTGCGGCGGTAAAGATCGCTTTCGCTGGACTGACAAAATC 284 Query 8434 AACACTCCGGGCGACGGCGGTGCGATCTGCAACTCATGCGGTAACGACTCTGGAGTCGGT 8493 ||| ||||||||||| || |||||| ||||| || || || || |||| Sbjct 285 AACGAGAAAGGCGACGGCGGAAACATTTGCAACCAGTGCGGCAATGATTCAGGGATCGGA 344 Query 8494 TGGTTGATG 8502 | ||| ||| Sbjct 345 TTGTTCATG 353 >seq9 Length=117247901 Score = 84.2 bits (92), Expect = 7e-12 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 45088 CATTTTGCCAGCAA-GCGTGAACGTGATCCGTTATTCCATGAGAAGGCTGTTGCCACCGC 45146 || ||||| ||||| ||||||||||||||| ||||| | ||||| |||| || || Sbjct 108216762 CACTTTGC-AGCAAAGCGTGAACGTGATCCAGACTTCCAGAAAAAGGCGGTTGAAACGGC 108216704 Query 45147 TCGGATTGCTGCTAATATTGGCGAAGCTATGGGCGTGACGTACATCATTGAGAATCCGGT 45206 ||||||||| ||||||| || | ||| | ||||| || |||||||| || Sbjct 108216703 AAAGATTGCTGCCAATATTGCGGATCGGTTTAACGTTCCATACATGATCGAGAATCCTGT 108216644 Query 45207 TAGCGTCCTGTCATCTGCCTGGAGAAAACCAGATCACTCCTTTAATCCCTGGGAGTATGG 45266 |||||||||||| || ||||| |||| ||| |||| |||| || | | ||| Sbjct 108216643 TAGCGTCCTGTCGTCGATGTGGAGGCAACCTGATTTTATCTTTCATCCTTGCGCATTTGG 108216584 Query 45267 CGG 45269 ||| Sbjct 108216583 CGG 108216581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160209794118696