Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05]
9,148 sequences; 2,189,140,010 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq14 91.5 1e-13
seq168 84.2 2e-11
seq231 82.4 7e-11
seq10 82.4 7e-11
>seq14
Length=44799946
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | ||||| || || || ||||| ||| | ||||| | || || ||| | |
Sbjct 8848130 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 8848071
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| || || | || || ||| ||| ||||| || || || || || ||||||
Sbjct 8848070 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 8848011
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||||| ||||| | | |||||||||| | ||||||| || | | | ||||| ||
Sbjct 8848010 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 8847951
Query 25355 ATTCAAAAAGAATCCACCATTCA 25377
||||| ||||| || || ||||
Sbjct 8847950 ATTCAGAAAGAGTCTACACTTCA 8847928
>seq168
Length=529997
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || || || | |||||||| ||||||| |||| ||||| |
Sbjct 131375 ATGCAAATCTTCGTTAAGACGCTTACCGGAAAGACGATCACTCTCGAGGTCGAGAGCTCT 131434
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || ||||| | || ||| ||||| || || || || || ||||| || |||
Sbjct 131435 GACACGATCGACAACGTGAAAGCCAAAATCCAAGACAAGGAAGGCATCCCGCCAGACCAG 131494
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||| | ||||| | || ||| || |||||||| || | | | | | ||||||||||
Sbjct 131495 CAACGTCTCATCTTCGCCGGAAAGCAACTCGAGGACGGGCGGACTTTAGCCGATTACAAT 131554
Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378
|| || || ||||| || |||||
Sbjct 131555 ATCCAGAAGGAATCGACTCTTCAT 131578
>seq231
Length=354869
Score = 82.4 bits (90), Expect = 7e-11
Identities = 108/146 (74%), Gaps = 3/146 (2%)
Strand=Plus/Plus
Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327
||||||||||| || || || |||||||| || | |||| | || || ||||| |||
Sbjct 77381 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTAGAA 77440
Query 25328 GATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386
|||| ||| | ||| ||||| || || ||||| || ||||| |||| |||| ||
Sbjct 77441 GATGGCCGAACCCT-AGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTT 77499
Query 25387 AAGATTGAGAGGAGGAA-AATGATCA 25411
||| | |||||||||| |||||||
Sbjct 77500 AAGGCTTAGAGGAGGAACCATGATCA 77525
>seq10
Length=91128445
Score = 82.4 bits (90), Expect = 7e-11
Identities = 108/146 (74%), Gaps = 3/146 (2%)
Strand=Plus/Plus
Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327
||||||||||| || || || |||||||| || | |||| | || || ||||| |||
Sbjct 62680663 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTAGAA 62680722
Query 25328 GATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386
|||| ||| | ||| ||||| || || ||||| || ||||| |||| |||| ||
Sbjct 62680723 GATGGCCGAACCCT-AGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTT 62680781
Query 25387 AAGATTGAGAGGAGGAA-AATGATCA 25411
||| | |||||||||| |||||||
Sbjct 62680782 AAGGCTTAGAGGAGGAACCATGATCA 62680807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445043503455360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |