Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq14 91.5 1e-13 seq168 84.2 2e-11 seq231 82.4 7e-11 seq10 82.4 7e-11 >seq14 Length=44799946 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || ||||| ||| | ||||| | || || ||| | | Sbjct 8848130 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 8848071 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || ||| ||| ||||| || || || || || |||||| Sbjct 8848070 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 8848011 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| ||||| | | |||||||||| | ||||||| || | | | ||||| || Sbjct 8848010 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 8847951 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 ||||| ||||| || || |||| Sbjct 8847950 ATTCAGAAAGAGTCTACACTTCA 8847928 >seq168 Length=529997 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | |||||||| ||||||| |||| ||||| | Sbjct 131375 ATGCAAATCTTCGTTAAGACGCTTACCGGAAAGACGATCACTCTCGAGGTCGAGAGCTCT 131434 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| ||||| || || || || || ||||| || ||| Sbjct 131435 GACACGATCGACAACGTGAAAGCCAAAATCCAAGACAAGGAAGGCATCCCGCCAGACCAG 131494 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||| | || ||| || |||||||| || | | | | | |||||||||| Sbjct 131495 CAACGTCTCATCTTCGCCGGAAAGCAACTCGAGGACGGGCGGACTTTAGCCGATTACAAT 131554 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 || || || ||||| || ||||| Sbjct 131555 ATCCAGAAGGAATCGACTCTTCAT 131578 >seq231 Length=354869 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/146 (74%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 ||||||||||| || || || |||||||| || | |||| | || || ||||| ||| Sbjct 77381 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTAGAA 77440 Query 25328 GATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| ||| | ||| ||||| || || ||||| || ||||| |||| |||| || Sbjct 77441 GATGGCCGAACCCT-AGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTT 77499 Query 25387 AAGATTGAGAGGAGGAA-AATGATCA 25411 ||| | |||||||||| ||||||| Sbjct 77500 AAGGCTTAGAGGAGGAACCATGATCA 77525 >seq10 Length=91128445 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/146 (74%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 ||||||||||| || || || |||||||| || | |||| | || || ||||| ||| Sbjct 62680663 GATAAAGAGGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTAGAA 62680722 Query 25328 GATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| ||| | ||| ||||| || || ||||| || ||||| |||| |||| || Sbjct 62680723 GATGGCCGAACCCT-AGCTGATTATAACATCCAAAAGGAGTCCACTCTTCACCTAGTTTT 62680781 Query 25387 AAGATTGAGAGGAGGAA-AATGATCA 25411 ||| | |||||||||| ||||||| Sbjct 62680782 AAGGCTTAGAGGAGGAACCATGATCA 62680807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445043503455360