Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq14 105 5e-18 seq13 96.9 3e-15 seq25 91.5 1e-13 seq11 86.0 5e-12 seq19 84.2 2e-11 seq1 84.2 2e-11 seq23 82.4 6e-11 seq17 82.4 6e-11 >seq14 Length=44799946 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || || ||||| ||||| || || ||| |||| ||| | | Sbjct 8848130 ATGCAGATTTTTGTCAAGACTTTGACCGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 8848071 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | | || || ||| ||| || || ||||| | || |||||| Sbjct 8848070 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 8848011 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 |||||||| || | ||| ||||||||||| |||||| | ||| ||| ||||| ||| Sbjct 8848010 CAAAGGCTCATCTTTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 8847951 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || || ||||| |||||||| || Sbjct 8847950 ATTCAGAAAGAGTCTACACTTCA 8847928 >seq13 Length=56485995 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || || ||||| ||||| || || ||| |||| ||| | | Sbjct 54271004 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACAATCACCTTGGAGGTTGAAAGCTCC 54271063 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | | || || ||| ||| || || ||||| | || |||||| Sbjct 54271064 GATACCATTGACAATGTTAAGGCAAAGATTCAGGATAAGGAAGGAATCCCACCTGATCAG 54271123 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 |||| ||| || | ||| ||||||||||| |||||| | ||| ||| ||||| ||| Sbjct 54271124 CAAATGCTCATCTCTGCCGGCAAACAATTGGAAGATGGGAGGACTTTGGCTGATTATAAC 54271183 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || || ||||| ||||| || || Sbjct 54271184 ATTCAGAAAGAGTCTACCCTTCA 54271206 >seq25 Length=50193149 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAAC--AGAACCCG 106317 |||||||| ||||| ||||| | ||||| ||||| |||||| |||| ||| || Sbjct 28160263 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTCGAGAGTTCG 28160322 Query 106318 GCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377 | || | ||| | | |||||| || ||| ||||||||||| | || || | Sbjct 28160323 G--ATACCATTGACAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACC 28160380 Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACA 106437 ||||||| | |||| ||| || |||||| | |||||| | |||| | | |||||| | Sbjct 28160381 AACAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTGCCGATTATA 28160440 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGT 106468 | || || || || ||||| || ||||| || Sbjct 28160441 ATATCCAGAAGGAGTCTACTCTCCATTTGGT 28160471 >seq11 Length=95484752 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || ||||| |||| ||||||||||| || ||||| ||| | Sbjct 29434661 ATGCAGATCTTCGTCAAAACCCTGACCGGCAAGACCATAACTTTGGAAGTCGAAAGCTCT 29434720 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | | || || ||| || ||||| |||||| | || || || Sbjct 29434721 GACACCATTGACAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCAGACCAG 29434780 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 |||||||| || | ||| || |||||| | || || | || ||| |||||||||| Sbjct 29434781 CAAAGGCTCATATTTGCCGGGAAACAACTCGAGGACGGTCGCACCTTGGCCGATTACAAC 29434840 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || || || || || || ||||| ||||||||| | || || || Sbjct 29434841 ATCCAGAAGGAGTCGACCCTCCATTTGGTATTGAGGCTTCGTGGTGG 29434887 >seq19 Length=70911690 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||| | ||||| |||||||| ||| | || |||| | | Sbjct 3146840 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAGACCATCACCCTTGAGGTAGAAAGCTCC 3146781 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || | | | || || ||||| ||||||||||| | || || ||| Sbjct 3146780 GATACTATCGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGGATTCCTCCAGACCAA 3146721 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||||||||| | ||| || |||||| | || ||| |||| | | ||| |||||| Sbjct 3146720 CAAAGGCTTATCTTTGCCGGAAAACAACTTGAGGATGGCCGAACTCTTGCCGACTACAAC 3146661 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||| || || || || || |||| Sbjct 3146660 ATCCAAAAGGAGTCCACCCTCCACCTAGT 3146632 >seq1 Length=92291805 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||| | ||||| || ||||| ||| | || ||| | | Sbjct 4410027 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAAACCATCACCCTTGAGGTGGAAAGCTCC 4409968 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || || ||||| |||||||||||| | || || ||| Sbjct 4409967 GATACTATTGATAATGTCAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGACCAA 4409908 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || |||||||||| ||| || |||||| | || ||| |||| | | ||| |||||| Sbjct 4409907 CAGAGGCTTATTTTTGCCGGAAAACAACTCGAGGATGGCCGAACTCTTGCCGACTACAAC 4409848 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||| || || || || || |||| Sbjct 4409847 ATCCAAAAGGAGTCCACCCTCCACCTAGT 4409819 >seq23 Length=61753794 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAAC--AGAACCCG 106317 |||||||| ||||| ||||| | ||||| ||||| |||||| |||| ||| || Sbjct 39554211 ATGCAAATCTTTGTCAAAACTCTCACTGGAAAGACAATTACCTTGGAGGTGGAGAGTTCG 39554152 Query 106318 GCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATC 106377 | || | ||| | |||||| || ||| ||||||||||| | || || | Sbjct 39554151 G--ATACCATTGATAATGTGAAAGCCAAGATTCAGGACAAAGAAGGAATCCCACCAGACC 39554094 Query 106378 AACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACA 106437 ||||||| | |||| ||| || |||||| | |||||| | ||| | | |||||| | Sbjct 39554093 AACAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACTCTTGCCGATTATA 39554034 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGT 106468 | || || || || ||||| || ||||| || Sbjct 39554033 ATATCCAGAAGGAGTCTACTCTCCATTTGGT 39554003 >seq17 Length=39386523 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| ||||| ||||||||||| || || || || |||| ||| Sbjct 31749023 ATGCAGATTTTCGTTAAGACATTGACTGGGAAAACAATCACATTGGAGGTGGAAAGTTCG 31749082 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | | ||||| ||| ||| ||||| ||||| | ||| ||||| Sbjct 31749083 GATACAATTGACAATGTGAAGGCAAAGATTCAGGACAAGGAAGGTATCCCCCCAGATCAG 31749142 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 |||||||| || | ||| ||||| ||||| || ||| | ||| | | ||||| ||| Sbjct 31749143 CAAAGGCTCATCTTTGCTGGCAAGCAATTGGAGGATGGGAGGACTTTAGCTGATTATAAC 31749202 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || || ||||| || || || || Sbjct 31749203 ATTCAGAAAGAGTCCACCCTTCA 31749225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402284743769984