Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq22 179 3e-40 seq19 136 3e-27 seq16 129 5e-25 seq228 102 6e-17 >seq22 Length=61129363 Score = 179 bits (198), Expect = 3e-40 Identities = 397/586 (68%), Gaps = 16/586 (3%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||||||| || ||||| | || ||||| |||||||||| ||||| | ||||| |||| Sbjct 6288152 TGTTTCCGATCCAATACCCAGAAGTATGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTT 6288093 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAG-CACATTGGATTGCATTAAAACC 43824 |||| ||||| ||||| ||| || || ||| ||| | ||| | ||| | | ||| Sbjct 6288092 GGACCGCAGAGGAAGTCGATCTGTCTTCAGATCTTCGTCAC-TGGGAA---ACTCTCACC 6288037 Query 43825 AC--AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATA 43882 | | || | || || || | ||| | || ||||| || || ||| || ||| Sbjct 6288036 GCCGATGAGCATCACTTCATTAGTCACGTTCTCGCCTTTTTCGCCGCCTCCGATGGCATA 6287977 Query 43883 GTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGT 43942 ||| ||| || | | | |||||| | |||| || || | | || || || | Sbjct 6287976 GTCCTTGAGAACCTTGCTGTTCGGTTCATGAAAGAGGTCCAGATCTCCGAGGCGCGTGCT 6287917 Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 |||||||| || ||||| || || |||||||| || || || ||||||||||| || | Sbjct 6287916 TTTTATGGTTTCCAAATCGCTATCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCTC 6287857 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || || ||||| |||||| | || ||| | || | || || || || || || Sbjct 6287856 GAGACTTACATAAAAGATTCCGATGAAAAGAACCGTCTTTTCCGCGCCATCGAGACGGTG 6287797 Query 44063 CC---TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT 44119 || || | |||| ||||| || ||||| | |||||||| | || || Sbjct 6287796 CCGTGTGTGGCTAAA---AAAGCCGAGTGGGCTATGAAATGGATCGACGGCGGAGAAACT 6287740 Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTT 44179 || | ||||| | |||| ||||| || ||||| || || || || ||| |||| Sbjct 6287739 TTCGCCGAACGGTTAATCGCTTTTGCTTGCGTAGAAGGGATCTTTTTCTCCGGAA-GTTT 6287681 Query 44180 GCG-GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 | ||||||||||||||||| || | || || ||||| || || || || ||||| || Sbjct 6287680 CTGTGCCATATTTTGGTTAAAAAAGAGGGGGTTAATGCCCGGATTAACTTTCTCAAACGA 6287621 Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 |||||| || |||||||| | || |||||||| ||||||||| Sbjct 6287620 GTTAATCTCACGAGATGAAGGTCTCCACTGCGATTTCGCTTGCTTG 6287575 >seq19 Length=70911690 Score = 136 bits (150), Expect = 3e-27 Identities = 241/346 (70%), Gaps = 8/346 (2%) Strand=Plus/Plus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 |||||||| || ||||| ||||| || ||||| || || || ||||| ||||| || | Sbjct 44463540 TTTTATGGATTCCAAATCGCCATCGAGAATATCCACTCTGAGATGTATAGTCTCCTCCTC 44463599 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || || || || |||||| ||| || | || | || | || | ||||| || Sbjct 44463600 GAAACTTATATTAAAGATTCCACCGAAAAAAACCGCCTCTTCCACGCTACTGAAACGGTG 44463659 Query 44063 CC-TGCGAT--TAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT 44119 || |||| |||| ||||| || ||||| | |||||||| | || || Sbjct 44463660 CCGTGCGTGGCTAAA---AAAGCCGATTGGGCTTTGAAATGGATCGACGGCGGCGAAGCT 44463716 Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTT 44179 |||| ||||| | |||| || || || |||||||| || || || || |||| Sbjct 44463717 TTTGCCGAACGGTTAATCGCTTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGCA-GTTT 44463775 Query 44180 GCG-GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 | || |||||||||||||| || || || || |||||||| || || || ||||| || Sbjct 44463776 CTGTGCGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCAAACGA 44463835 Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 ||| || ||| |||||||| | |||||||| |||||||||||| Sbjct 44463836 GTTGATCTCTCGAGATGAAGGTCTCCATTGCGACTTTGCTTGCTTG 44463881 >seq16 Length=102030775 Score = 129 bits (142), Expect = 5e-25 Identities = 239/347 (69%), Gaps = 8/347 (2%) Strand=Plus/Plus Query 43942 TTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGAT 44001 ||||||||| || ||||| || || |||||||| || || || ||||||||||| || | Sbjct 57862037 TTTTTATGGTTTCCAAATCGCTATCGAAAATATCCACTCCGAGATGTACAGTCTCCTTCT 57862096 Query 44002 AGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGT 44061 || || ||||| |||||| | || ||| | || | || || || || || || Sbjct 57862097 CGAGACTTACATAAAAGATTCCGATGAAAAGAACCGTCTTTTCCGCGCCATCGAGACGGT 57862156 Query 44062 ACC---TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTC 44118 || || | |||| ||||| || ||||| | |||||||| | || | Sbjct 57862157 GCCGTGTGTGGCTAAA---AAAGCCGAGTGGGCTATGAAATGGATCGACGGCGGAGAAAC 57862213 Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT 44178 ||| | ||||| | |||| ||||| || || || || || || || ||| ||| Sbjct 57862214 TTTCGCCGAACGGTTAATCGCTTTTGCTTGCGTAGAGGGGATCTTTTTCTCCGGAA-GTT 57862272 Query 44179 TGCG-GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 | | ||||||||||||||||| || | || || ||||| || || || || ||||| | Sbjct 57862273 TCTGTGCCATATTTTGGTTAAAAAAGAGGGGGTTAATGCCCGGATTAACTTTCTCAAACG 57862332 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 ||||||| || |||||||| | || || ||||| ||||||||| Sbjct 57862333 AGTTAATCTCACGAGATGAAGGTCTCCACTGTGATTTCGCTTGCTTG 57862379 >seq228 Length=356584 Score = 102 bits (112), Expect = 6e-17 Identities = 125/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 44118 CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGT 44177 |||||| ||||| | |||| || || || |||||||| || || || || | Sbjct 282492 CTTTTGCCGAACGGTTAATCGCTTTCGCTTGCGTAGAAGGCATATTTTTCTCCGGCAGTT 282433 Query 44178 T-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 | |||| | |||||||||||||| || || || || |||||||| || || || ||||| Sbjct 282432 TCTGCG-CGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCAAAC 282374 Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 ||||| || ||| |||||||| | |||||||| |||||||||||| Sbjct 282373 GAGTTGATCTCTCGAGATGAAGGTCTCCATTGCGACTTTGCTTGCTTG 282326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397411687133740