Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq22 120 3e-22 seq16 111 2e-19 >seq22 Length=61129363 Score = 120 bits (132), Expect = 3e-22 Identities = 244/356 (69%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 59766 AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATC--AGTCGTTCAACGAGT 59823 || || |||||||| ||||||| || | || || | || || | ||| | | ||| Sbjct 6287946 AAAGAGGTCCAGATCTCCGAGGCGCGTGCTTTTTATG-GTTTCCAAATCGCT-ATCGAAA 6287889 Query 59824 CTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGA 59883 |||||||||||||| |||| ||| | |||| | | | || ||| | || || | Sbjct 6287888 ATATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGATGAAA 6287829 Query 59884 AGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGG 59943 || |||| ||||| ||||| |||||| || || ||||||| || |||| Sbjct 6287828 AGAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGG 6287769 Query 59944 CCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGC 60002 | ||| | ||||| || | |||| | | || || |||| | || |||||||| ||| Sbjct 6287768 CTATGAAATGGATCGACGGC-GGAGAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTGC 6287710 Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || ||||| ||||| ||||| || |||||||| || || ||| | |||||| | || Sbjct 6287709 GTAGAAGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGGG 6287650 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 | ||||| || | | |||||| |||||| | || || || || || || ||||| Sbjct 6287649 TTAATGCCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCA 6287594 >seq16 Length=102030775 Score = 111 bits (122), Expect = 2e-19 Identities = 203/295 (69%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 59825 TATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAA 59884 |||||||||||||| |||| ||| | |||| | | | || ||| | || || || Sbjct 57862067 TATCCACTCCGAGATGTACAGTCTCCTTCTCGAGACTTACATAAAAGATTCCGATGAAAA 57862126 Query 59885 GGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGC 59944 | |||| ||||| ||||| |||||| || || ||||||| || ||||| Sbjct 57862127 GAACCGTCTTTTCCGCGCCATCGAGACGGTGCCGTGTGTGGCTAAAAAAGCCGAGTGGGC 57862186 Query 59945 CATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCG 60003 ||| | ||||| || | |||| | | || || |||| | || |||||||| |||| Sbjct 57862187 TATGAAATGGATCGACGGC-GGAGAAACTTTCGCCGAACGGTTAATCGCTTTTGCTTGCG 57862245 Query 60004 TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCC 60063 | || || ||||| ||||| || |||||||| || || ||| | |||||| | || Sbjct 57862246 TAGAGGGGATCTTTTTCTCCGGAAGTTTCTGTGCCATATTTTGGTTAAAAAAGAGGGGGT 57862305 Query 60064 TCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 | ||||| || | | |||||| |||||| | || || || || || || ||||| Sbjct 57862306 TAATGCCCGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAGGTCTCCA 57862360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548462076189120