Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1149 89.7 6e-13 seq39 89.7 6e-13 seq25 89.7 6e-13 seq22 89.7 6e-13 seq2 89.7 6e-13 seq96 87.8 2e-12 seq24 87.8 2e-12 seq19 84.2 2e-11 seq6 82.4 8e-11 >seq1149 Length=49990 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 25206 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 25265 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 25266 TGAGCTACGAAAGC 25279 >seq39 Length=1724794 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 849307 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 849366 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 849367 TGAGCTACGAAAGC 849380 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 859626 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 859685 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 859686 TGAGCTACGAAAGC 859699 >seq25 Length=50193149 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 39965396 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 39965455 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 39965456 TGAGCTACGAAAGC 39965469 >seq22 Length=61129363 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 48014981 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 48014922 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 48014921 TGAGCTACGAAAGC 48014908 >seq2 Length=106994729 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 7391661 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 7391720 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 7391721 TGAGCTACGAAAGC 7391734 >seq96 Length=793887 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| |||||||||||||||||| |||||||| ||||| Sbjct 588119 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACAGGTGCTCTAACCAAC 588178 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 588179 TGAGCTACGAAAGCA 588193 >seq24 Length=55877068 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| |||||||||||||||||| |||||||| ||||| Sbjct 30326915 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACAGGTGCTCTAACCAAC 30326856 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 30326855 TGAGCTACGAAAGCA 30326841 >seq19 Length=70911690 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 65066713 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 65066772 Query 79684 TGAGCTACGAAAGCAAAA 79701 ||||||| |||||| ||| Sbjct 65066773 TGAGCTATGAAAGCTAAA 65066790 >seq6 Length=79162310 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 61041961 CTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 61042020 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 61042021 CTGAGCTATGAAAGC 61042035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547153425850400