Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_028760.1 Length=49037 Score E Sequences producing significant alignments: (Bits) Value seq5259 104 7e-18 >seq5259 Length=4105 Score = 104 bits (114), Expect = 7e-18 Identities = 201/294 (68%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 30956 AAAGTCCTTAAAGAAATCTACTGCCTCAGCAATGACGGTCTCCTGCGATTGGTAGTAACG 31015 ||||| || ||||| || | ||| || |||| | | || | |||||||||||| Sbjct 1688 AAAGTTTTTGAAGAATTCAATTGCTTCCTCAATTCCAGGTTCTTTGCTTTGGTAGTAACG 1629 Query 31016 CAGAGTTTCCGCAACATCCTGCGCCAGGCCGTCAACAGTCAGGGAGTCGCTTAACAGGAT 31075 |||||||||||| ||||| ||||||| || || ||||| || ||||| | |||||||| Sbjct 1628 CAGAGTTTCCGCTACATCTTGCGCCATTCCATCGACAGTTAGCGAGTCATTCAACAGGAT 1569 Query 31076 CGCGTAGTCACTGGACGGAACAGCCGCGCCGTTTGTGGAGATAGCATTGATTTGCGTATC 31135 | | || | | || | | |||||| || ||| || || |||| ||||| Sbjct 1568 CACATAATTTACGTTTTCTACTGGCTCGCCGTCAGTCTGGATCGCTTTCATTTCTGTATC 1509 Query 31136 ACTTACAACCTTGTTAACTACCGCTATTTGAATCGGGGACGATAAAAACAGGATCGTAGC 31195 ||||||| | | | | ||||| | || | || | | |||||| | ||| || || Sbjct 1508 GCTTACAATATCGCTGATAACCGCCAGTTTTAAAGGAGTGGTTAAAAATACGATTGTTGC 1449 Query 31196 GCCTGGGCGAATGAGCGTTAGC-GCTGATTGCCAGTTAGTTCCAGTCCCGGTGA 31248 ||| | |||||| || | ||| ||| | |||| || || ||||| || |||| Sbjct 1448 GCCAGTGCGAATAAGAGAAAGCGGCTCA-CGCCATTTTGTGCCAGTACCAGTGA 1396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156779766771624