Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq2506 98.7 4e-16 >seq2506 Length=12822 Score = 98.7 bits (108), Expect = 4e-16 Identities = 222/328 (68%), Gaps = 12/328 (4%) Strand=Plus/Minus Query 5841 CGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCATCCACCACGGCCTGCGCCTGCTGGA 5900 |||||| || || || || ||||||| || ||| || ||||| | | || ||||| Sbjct 9875 CGGCCCCGCCGGCACCGGCAAGACCTATCTCGCCGTCGCCCACGCCGCCCAGCTTCTGGA 9816 Query 5901 GGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGCT 5960 | |||| || | ||||| || || | | ||||| ||||| ||||| | ||| ||| Sbjct 9815 GCGCGGGCAGGTGGAGCGCATCATCCTGTCGCGGCCGGCCGTGGAGGCGGGCGAGCGGCT 9756 Query 5961 CGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGGA 6020 |||||||||||| ||| || | |||||| | | ||||| || ||| | || Sbjct 9755 CGGCTTCCTGCCGGGCGACATGAAGGAGAAGGTCGACCCCTATCTGCGGCCGCTCTACGA 9696 Query 6021 CGCGGTGATCGACCTGGT-CGGCCCGACGATGACGAAGCGCCTCCTCGAGTCGCGCCAGC 6079 |||| | |||| || | | | |||| || | | ||||| | || | ||||| || Sbjct 9695 CGCGCTCTACGACATGATGCCGGCCGA-GAAGGTGGAGCGCGCCATC--GCCGCGCAGGC 9639 Query 6080 --TGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGACGTT---CAACGACACGTACAT 6134 | ||| |||| ||||| |||| |||||| || || ||| | ||||| | | ||| Sbjct 9638 GATCGAGATCGCGCCGCTCGCCTTCATGCGCGGGCGCACGCTCGCCAACGCCGCCGTCAT 9579 Query 6135 CGTCGCTGACGAGATGCAGAACGCCACC 6162 | || |||||| ||||||| ||||| Sbjct 9578 CCTC---GACGAGGCGCAGAACACCACC 9554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191467198179840