Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_028774.1 Length=48754 Score E Sequences producing significant alignments: (Bits) Value seq5259 129 2e-25 >seq5259 Length=4105 Score = 129 bits (142), Expect = 2e-25 Identities = 206/295 (70%), Gaps = 8/295 (3%) Strand=Plus/Minus Query 23161 AAAGTTCTTGAAGAACTCGACTGCATCCGCAATTACGGTTTCCTGTGACTGATAGTAGCG 23220 |||||| |||||||| || | ||| ||| ||||| | | ||| | || ||||| || Sbjct 1688 AAAGTTTTTGAAGAATTCAATTGCTTCCTCAATTCCAGGTTCTTTGCTTTGGTAGTAACG 1629 Query 23221 CAGAGTTTCGGCAACATCTTGCGCCAGGCCGTCAACGGTTAGCGAGTCGCTTAACAGGAT 23280 ||||||||| || ||||||||||||| || || || ||||||||||| | |||||||| Sbjct 1628 CAGAGTTTCCGCTACATCTTGCGCCATTCCATCGACAGTTAGCGAGTCATTCAACAGGAT 1569 Query 23281 CGCGTAATCTGTAGACG----CTACGACAGCGCCTTTTGTGGTGATGGCTTTAATTTCAG 23336 | | |||| | ||| |||| |||| | || ||| ||||| ||||| | Sbjct 1568 CACATAATTT----ACGTTTTCTACTGGCTCGCCGTCAGTCTGGATCGCTTTCATTTCTG 1513 Query 23337 TATCGCTAACCACCTTGTTTACGACGGCCATTTGAATCGGTGACGACAAAAACATAATCG 23396 ||||||| || | | | | | || |||| || | || | | ||||| | || | Sbjct 1512 TATCGCTTACAATATCGCTGATAACCGCCAGTTTTAAAGGAGTGGTTAAAAATACGATTG 1453 Query 23397 TCGCGCCGGGGCGAATCAGCGAAAGCGAAGATTGCCATTTTGTGCCAGTCCCGGT 23451 | ||||| | |||||| || ||||||| |||||||||||||||| || || Sbjct 1452 TTGCGCCAGTGCGAATAAGAGAAAGCGGCTCACGCCATTTTGTGCCAGTACCAGT 1398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155874265149216