Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_028778.1 Length=75626 Score E Sequences producing significant alignments: (Bits) Value seq1304 82.4 4e-11 >seq1304 Length=41235 Score = 82.4 bits (90), Expect = 4e-11 Identities = 63/72 (88%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 65540 GGGATCGAACCCCGGACCCGCTGATTAAAAGTCAGCTGCTCTACCAACTGAGCTA-GCG- 65597 ||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 34996 GGGCTCGAACCAAGGACCCGCTGATTAAGAGTCAGCTGCTCTACCAACTGAGCTATGCGT 35055 Query 65598 CGGCGGTGCGAG 65609 | || ||| ||| Sbjct 35056 CCGCCGTGAGAG 35067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 241851432674836