Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_028786.1 Length=49462 Score E Sequences producing significant alignments: (Bits) Value seq5259 118 3e-22 >seq5259 Length=4105 Score = 118 bits (130), Expect = 3e-22 Identities = 199/287 (69%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 44012 ACTGGCACTGGCACAAAGTGGCAATCATCGCTTTCGCTGATTCGCCCCGGCGCGACGATT 44071 ||||| ||||||||||| |||| ||||||| || |||||| | ||||| || || Sbjct 1398 ACTGGTACTGGCACAAAATGGCGTGAGCCGCTTTCTCTTATTCGCACTGGCGCAACAATC 1457 Query 44072 ATGTTTTTGTCGTCACCAATTCAAATGGCCGTCGTAAACAAGGTGGTTAGCGATACTGAA 44131 | ||||| | | || | || |||| || | | | | | || |||||||| ||| Sbjct 1458 GTATTTTTAACCACTCCTTTAAAACTGGCGGTTATCAGCGATATTGTAAGCGATACAGAA 1517 Query 44132 ATTAAAGCTATCACCACAAACGGCGCTGTCGTAGCGTCTAGCG---ATTACGCGATTCTG 44188 || ||||| ||| || |||||| |||| | || |||| | ||| ||| Sbjct 1518 ATGAAAGCGATCCAGACTGACGGCGAGCCAGTAGAA---AACGTAAATTATGTGATCCTG 1574 Query 44189 TTAAGCGACTCGCTGACCGTTGATGGTCTGGCGCAAGATGTTGCGGAAACTCTGCGCTAC 44248 || | |||||||| || || ||||| ||||||||||||| |||||||||||||| ||| Sbjct 1575 TTGAATGACTCGCTAACTGTCGATGGAATGGCGCAAGATGTAGCGGAAACTCTGCGTTAC 1634 Query 44249 TATCAGTCACAGGAAACCGTAATTGCGGATGCAGTCGAGTTCTTTAA 44295 || || | ||| | | ||||| ||| ||| | || ||||| || Sbjct 1635 TACCAAAGCAAAGAACCTGGAATTGAGGAAGCAATTGAATTCTTCAA 1681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158139619031424