Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_028915.1 Length=43228 Score E Sequences producing significant alignments: (Bits) Value seq1219 284 3e-72 seq4166 257 5e-64 >seq1219 Length=45996 Score = 284 bits (314), Expect = 3e-72 Identities = 540/785 (69%), Gaps = 14/785 (2%) Strand=Plus/Minus Query 17910 CTTCATTATTGGAGGAGCAACGCAAGCATCTATAAGACGTAACATACTAGATGATATGGA 17969 ||||||||||||||| || || || || |||||| | ||||||||||| ||||| ||||| Sbjct 27622 CTTCATTATTGGAGGCGCTACTCACGCGTCTATACGCCGTAACATACTGGATGACATGGA 27563 Query 17970 GTTAATACTAGGTAGAGAGTTAACACTCGATAAATCTAACGCAGTCAAAATATTTGGTAA 18029 || | |||| |||| | | || |||||| | |||||| | | ||||| || || Sbjct 27562 AACCATCATTGGTAAAGAGCTCAAGCTTGATAAAACGAACGCAATTGAGATATTCGGCAA 27503 Query 18030 TAAAGTGTATGTATTCGACGGACAAAACTCGGATGCATGGAAAAAAGCGCGTGGTTTTAC 18089 ||||| ||||| || || || ||| |||| ||||||||||||||||||||||| Sbjct 27502 CAAAGTTTATGTGTTTGATGGCGCGAACGCGGACAGTTGGAAAAAAGCGCGTGGTTTTAC 27443 Query 18090 TTCAGCAGGTGCTTTTTTAAATGAGGGAACAGCATTACACAATATGTTTATTAAAGAAGT 18149 || || || || | ||||| ||||| || || || || ||| ||| | ||||| || Sbjct 27442 CTCTGCTGGCGCGCTATTAAACGAGGGTACCGCGTTGCATGATACCTTTGTGAAAGAGGT 27383 Query 18150 GTTCTCACGTTGTAGTTACAAAGGCGCGAGAATATTAATTGATACAAACCCCGAAAACCC 18209 |||| |||||| |||||||| || | || || || ||||||||||| || || || Sbjct 27382 TATCTCGCGTTGTTCATACAAAGGATCGCGTATTTTGATAGATACAAACCCGGAGAATCC 27323 Query 18210 AATGCATCCAGTTAAAAAAGATTACATTGATAAGAGTGGTCAACGATTATCGAATGGAAG 18269 ||| ||||||| |||||||||||||| || ||| || || || | Sbjct 27322 TGCTCATAGCGTTAAAACGGATTACATTGATAAAGACGGGCAAATGCTACAGACGGGTCG 27263 Query 18270 ACTAAATATCAAAGCATTTCAATTTACTTTGTTCGACAATACATTTTTAGATGAAGAATA 18329 || ||||| |||||||| || || | | | ||||| | |||| | ||| || || Sbjct 27262 CCTTAATATAAAAGCATTCCACTTCTCGCTCTATGACAACATATTTCTTGATCCCGAGTA 27203 Query 18330 TATTGAATCGATTATAGCGAGTACACCAACAGGAATGTTCACAGATCGTGACATTTATGG 18389 | | || || ||| | || || || | || |||||||| ||||| || || |||| Sbjct 27202 TGTGGAGTCAATTGTCGCCTCCACGCCTTCCGGCATGTTCACGGATCGAGATATCCATGG 27143 Query 18390 TAAGTGGGTTTCTGCTGAGGGTGTTGTATATAAAGATTTCA--AAGAAAAAGTTCATTAC 18447 | | ||||| | || ||||||||| | ||||| || |||| ||| ||||| || || Sbjct 27142 TCATTGGGTGGCGGCAGAGGGTGTTATTTATAAGGACTTCAACAAGGAAAAG--CACTAT 27085 Query 18448 ATCACAGAAGAAGAATTTAAAACTAAACAAATAAAAAGGAAATATGCAGGCGTCGACTGG 18507 ||| ||| ||||| ||| ||| | || | | | | | ||| || || |||||| Sbjct 27084 ATCTCAGTAGAAGCCTTTCAAAAAGTCCGCATTACTAAGTATTTTGCTGGTGTTGACTGG 27025 Query 18508 GGATATGAGCATTATGGTTCTATTATGGTTGTAGCGGAAGACTTCGACGGAAACAAG--T 18565 || || ||||| |||| || ||| | || || |||| | | || | | | | Sbjct 27024 GGTTACGAGCACCATGGGTCGATTGTCGT--TATGGGAATAGATGATCGAGAGCGCGTTT 26967 Query 18566 ACGTTATTGAAGAACACGC-ACACAGACATAAAGAAATAGATGACTGGGTAGCTATTGCA 18624 | | ||||| |||||||| |||| |||| | ||||| ||| ||||||| | || Sbjct 26966 ATCTCATTGAGGAACACGCTGCACA-ACATGAGGAAATTGATTACTGGGTGAAGAAAGCG 26908 Query 18625 AAAGGAGTTATAAAAAGGCAT--GGCGATATTCTTTTTTATTGTGATACAGCCAGACCTG 18682 ||| ||| | ||| | || ||| |||| ||||| || |||||||| ||||| | Sbjct 26907 AAA-GAGAT-CAAACTGAAATACGGCAATATCAACTTTTACTGCGATACAGCGAGACCAG 26850 Query 18683 AACAT 18687 | ||| Sbjct 26849 AGCAT 26845 >seq4166 Length=5795 Score = 257 bits (284), Expect = 5e-64 Identities = 574/854 (67%), Gaps = 12/854 (1%) Strand=Plus/Plus Query 17910 CTTCATTATTGGAGGAGCAACGCAAGCATCTATAAGACGTAACATACTAGATGATATGGA 17969 ||||||||| ||||| || || || || || ||| | ||||||||| | || || ||||| Sbjct 731 CTTCATTATCGGAGGCGCTACTCACGCGTCGATACGCCGTAACATATTGGACGACATGGA 790 Query 17970 GTTAATACTAGGTAGAGAGTTAACACTCGATAAATCTAACGCAGTCAAAATATTTGGTAA 18029 || | | | |||| | | || |||||| | ||||| | | ||||| ||||| Sbjct 791 AACGATCATCGACAAAGAGCTGAAGCTTGATAAAACGAACGCGATTGAGATATTCGGTAA 850 Query 18030 TAAAGTGTATGTATTCGACGGACAAAACTCGGATGCATGGAAAAAAGCGCGTGGTTTTAC 18089 ||||| ||||| || || || ||| ||||| ||||| ||||||||||||||||| Sbjct 851 CAAAGTATATGTGTTTGATGGCGCAAATGCGGATAGTTGGAAGAAAGCGCGTGGTTTTAC 910 Query 18090 TTCAGCAGGTGCTTTTTTAAATGAGGGAACAGCATTACACAATATGTTTATTAAAGAAGT 18149 || || || || | ||||| || || || || || || | | || | ||||| || Sbjct 911 CTCTGCTGGGGCACTGTTAAACGAAGGTACCGCGTTGCATGACACTTTCGTGAAAGAGGT 970 Query 18150 GTTCTCACGTTGTAGTTACAAAGGCGCGAGAATATTAATTGATACAAACCCCGAAAACCC 18209 |||| |||||| ||| |||||| || | || ||||||||||||||||| || || || Sbjct 971 TATCTCGCGTTGTTCTTATAAAGGCTCGCGTATCTTAATTGATACAAACCCGGAGAATCC 1030 Query 18210 AATGCATCCA--GTTAAAAAAGATTACATTGATAAGAGTGGTCAACGATTATCGAATGGA 18267 ||| || || |||| ||||| || ||||| || ||| || || || Sbjct 1031 --TGCTCACAGCGTAAAAACGGATTATATCGATAAAGACGGGCAAATGCTACAGACGGGT 1088 Query 18268 AGACTAAATATCAAAGCATTTCAATTTACTTTGTTCGACAATACATTTTTAGATGAAGAA 18327 | || ||||||||||| ||||| ||| | | | |||||||| ||| | ||| || Sbjct 1089 CGCCTCAATATCAAAGCGTTTCACTTTTCGCTCTACGACAATATCTTTCTTGATCCTGAG 1148 Query 18328 TATATTGAATCGATTATAGCGAGTACACCAACAGGAATGTTCACAGATCGTGACATTTAT 18387 ||| | || || ||| | || || || | || |||||||||||||| || ||| || Sbjct 1149 TATGTGGAGTCAATTGTCGCTTCCACGCCTTCCGGCATGTTCACAGATCGGGATATTCAT 1208 Query 18388 GGTAAGTGGGTTTCTGCTGAGGGTGTTGTATATAAAGATTTCAAAGAAAAAGTTCATTAC 18447 ||| | ||||| |||||||||||||| |||| || || ||||| || | || || Sbjct 1209 GGTCATTGGGTGGCTGCTGAGGGTGTTATATACAAGGACTTCAACAAAGACAAGCACTAT 1268 Query 18448 ATCACAGAAGAAGAATTTAAAACTAAACAAATAAAAAGGAAATATGCAGGCGTCGACTGG 18507 ||| ||| ||||| ||| ||| | || | | | | || || || |||||| Sbjct 1269 ATCTCAGCAGAAGCCTTTGAAAAAGCGCGCATCACCAAATACTTCGCTGGTGTTGACTGG 1328 Query 18508 GGATATGAGCATTATGGTTCTATTATGGTTGT-AGCGGAAGACTTCGACGGAAACAAG-- 18564 || |||||||| |||| || || ||||| | || | | ||| | | || Sbjct 1329 GGCTATGAGCACCATGGATC---CATCGTTGTCATGGGTATTGATGATCGGGAGCGAGTA 1385 Query 18565 TACGTTATTGAAGAACACGC-ACACAGACATAAAGAAATAGATGACTGGGTAGCTATTGC 18623 || | || || |||||||| |||||| ||| | ||||| ||| | ||||| | || Sbjct 1386 TATCTCATCGAGGAACACGCTACACAG-CATGAGGAAATCGATTATTGGGTGAAGAAAGC 1444 Query 18624 AAAAGGAGTTATAAAAAGGCATGGCGATATTCTTTTTTATTGTGATACAGCCAGACCTGA 18683 |||| | ||| | | | || |||| ||||| || || ||||| |||||||| Sbjct 1445 GAAAGAAATTAAACTGAAATACGGTAATATCAACTTTTACTGCGACACAGCAAGACCTGA 1504 Query 18684 ACATATTGAACGATTTAGAAGAGAGAAGATAAAAGCAAGATATGCTGACAAAGCTGTTAT 18743 ||| | | | || |||| ||| ||| |||| | || || || || ||| | Sbjct 1505 GCATGTAATAAGGTTCCGAAGGGAGCGAATACGTGCAATTAACGCAGATAAGGCGGTTGT 1564 Query 18744 TGCTGGCATTGAAG 18757 |||| ||||||| Sbjct 1565 ATCTGGTATTGAAG 1578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138192986119440