Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_028917.1 Length=41931 Score E Sequences producing significant alignments: (Bits) Value seq1219 98.7 3e-16 >seq1219 Length=45996 Score = 98.7 bits (108), Expect = 3e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 21433 TCAGGTCGTGCAGTATCGCAGTAAAAATTAATATTGCCATATCTACTTACAATATCTTTT 21492 || |||| || |||||||||||||| || |||||||| ||| | | || ||||| Sbjct 26849 TCTGGTCTCGCTGTATCGCAGTAAAAGTTGATATTGCCGTATTTCAGTTTGATCTCTTTC 26908 Query 21493 GCAATAACCACCCAATCATCAATAAACTTAAATTGGTGTGCGTGCTCCTCAATAAAATAA 21552 || | |||||| | |||||| || | ||| ||||| |||||||| | |||| Sbjct 26909 GCTTTCTTCACCCAGTAATCAATTTCCTCATGTTGTGCAGCGTGTTCCTCAATGAGATAA 26968 Query 21553 AAGTTACCATCTAT-ACCTCGTCCTATTAACACAATAGATCCATAGTGCTCGTAACCCCA 21611 | | | || || | || ||| || | ||||| || |||| ||||||||||||||| Sbjct 26969 ACGCGCTC-TCGATCATCTATTCCCATAACGACAATCGACCCATGGTGCTCGTAACCCCA 27027 Query 21612 GTCGACACCAGCAAAGTA 21629 ||| ||||||||||| || Sbjct 27028 GTCAACACCAGCAAAATA 27045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134043036987768