Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_029029.1 Length=45552 Score E Sequences producing significant alignments: (Bits) Value seq1219 104 7e-18 >seq1219 Length=45996 Score = 104 bits (114), Expect = 7e-18 Identities = 228/338 (67%), Gaps = 4/338 (1%) Strand=Plus/Minus Query 35703 TTTAGGAGGAATCAAGCATGAATCAATTACAAGTAATCGAACACCAAGGTAAACGTGTAC 35762 || ||||| ||| | |||||| |||| ||||| || ||||| || | ||| Sbjct 39193 TTAAGGAGTGATCCA--ATGAATGGATTAACCGTAATTGAGAGAGAAGGTCAAAGGGTAT 39136 Query 35763 TTACTACAAATCAATTAGCAGAAGTTTATGGAGCAGATGTAAAACATATCCACGACAACT 35822 | || || | |||| | || ||| | |||| | || || ||| || || || | Sbjct 39135 TAACAACCAGTCAACTTGCTGAACACTTTGGATCTGACGTTAAAATCATTAACCGTAATT 39076 Query 35823 TTCAAAATAATGAAAGTCGATACAAGGTTGGTAAACATTACTTTGTAATACAAGGTGAGG 35882 |||| | |||| |||||||| ||||| |||||||| |||| | || |||| Sbjct 39075 TTCAGAGGAATGCTTCGCGATACAAAGTTGGAAAACATTATTTTGCTTTGACTGGAGAGG 39016 Query 35883 AGTTAAGGCAGTTTAAAGCTTCTACGCAAATATCGGGGAA-CCTCAAATTTGCTCCAATC 35941 | |||||| | ||||||| || ||| ||| | | | ||| |||| | || | Sbjct 39015 ATTTAAGGGATTTTAAAGGGTC-ACGTCAATTTGACGCTAGCCTTAAATACACATCAGTG 38957 Query 35942 CTATATCTTTGGACGGAAAAAGGCGCGTGGCTTCAAGCGAAATCTCTTAACACAGATCAA 36001 || ||||||||||| || |||||||| ||||| || || ||||| | ||||| || || Sbjct 38956 CTTTATCTTTGGACAGAGAAAGGCGCATGGCTACATGCTAAATCGTTAAACACTGACGAA 38897 Query 36002 GCGTGGGAAGCCTACGAAATGCTAGTAGATGATTACTA 36039 || ||||| || ||||| || ||||| || ||||| Sbjct 38896 GCATGGGACGCTTACGAGGCTCTTGTAGACGACTACTA 38859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145628978241264