Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_029099.1 Length=49797 Score E Sequences producing significant alignments: (Bits) Value seq5259 116 1e-21 >seq5259 Length=4105 Score = 116 bits (128), Expect = 1e-21 Identities = 203/294 (69%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 31819 AAAGTTCTTGAAGAACTCGACTGCATCCGCGATCACGGTTTCCTGTGACTGATAGTAGCG 31878 |||||| |||||||| || | ||| ||| | || | | ||| | || ||||| || Sbjct 1688 AAAGTTTTTGAAGAATTCAATTGCTTCCTCAATTCCAGGTTCTTTGCTTTGGTAGTAACG 1629 Query 31879 CAGAGTTTCAGCAACATCTTGCGCCAGACCGTCAACGGTAAGTGAGTCACTTAACAGGAT 31938 ||||||||| || ||||||||||||| || || || || || |||||| | |||||||| Sbjct 1628 CAGAGTTTCCGCTACATCTTGCGCCATTCCATCGACAGTTAGCGAGTCATTCAACAGGAT 1569 Query 31939 CGCGTAAT---CGCTAGACGCTACGACAGCGCCGTTTGTGGTGATGGCTTTAATTTCAGT 31995 | | |||| || | |||| |||||| || ||| ||||| ||||| || Sbjct 1568 CACATAATTTACGTT---TTCTACTGGCTCGCCGTCAGTCTGGATCGCTTTCATTTCTGT 1512 Query 31996 ATCGCTAACCACCTTGTTTACGACGGCCATTTGAATTGGTGACGACAAAAACATAATCGT 32055 |||||| || | | | | | || |||| || | || | | ||||| | || || Sbjct 1511 ATCGCTTACAATATCGCTGATAACCGCCAGTTTTAAAGGAGTGGTTAAAAATACGATTGT 1452 Query 32056 CGCGCCTGGGCGAATCAGCGAAAGCGAAGATTGCCATTTTGTGCCAGTCCCGGT 32109 ||||| | |||||| || ||||||| |||||||||||||||| || || Sbjct 1451 TGCGCCAGTGCGAATAAGAGAAAGCGGCTCACGCCATTTTGTGCCAGTACCAGT 1398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159211502577384